RNA id: AMCG00019456


Basic Information

Item Value
RNA id AMCG00019456
length 860
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00019456
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 21234768 ~ 21242674 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACCATCCTAAAAAGACCTGTTGATTCAACTGTGAAACTGCAGAAGGATATGACCCTGAAATGTGTGTGTCCCTGGAGGGGTAACCTCAGTATGGTATCCTGGGAAAAGAGAACAAACAAGGGGAAAGAACAGGTAGCAGTGTACCACACAACATTCGGCACCACAACAAAGGGAAGATTTAACGGAAGAGTTACATTTGTTAATTCATTGCCGTTAGATGGAAGCATTATAATCAATCAAACCACAGATGATGATCTTGGCTTTTATCACTGTTCCATACAAACATTTCCAGGGGGATCATGGAGTAAAAACATACTTGTGGAAAATGCAGgcaaCTTTATTACTACTAAATCTGAAACTGAGGCTGTAGTTGAAAAAGGTCATAATTTCACTCTTAATTGCCGCTATAACCAGAATGGTACAGTTTACCATGTGGCTTTTGAAAAGATTGGAGAGAAATCTAAAGACACCATAGTCTTCTGCAATTTTTCAGATGCTATCTACATTGGTTCAGATTACAAGAACAGGATTCTGTTCGACTGCAGCAGTGCATTACACGCCAGCATACTGATCACGAATATAACGGAAGAAGATGGTGGGATTTACCAATGTCACTTCAGTACTGAGACGGGAAATCAAACAACAACAGTCTCTTTGAATGGGCCTAAATGGGGAATGAATGAGAagatGCGGAAAAAGAAACTAATGAGAGTCAAATTCCAACCTGGAAAAAGACGgCAACACAACAAGTATGAACCGGCAGCTGTTtatgacaaaatgaaaagaaggcCCAAGCAGCAGGAAATGGATGATATCTACATAAATCTTCCAAATCAACCACGTCGAACAAAGAAGAAG

Function

GO: NA

KEGG:

id description
K06567 CD226, DNAM1; CD226 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42753 lncRNA downstream 685068 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 1753800 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 1933221 19294812 ~ 19301547 (-) False AMCG00019417
TU42915 lncRNA upstream 195241 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 303534 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 1465271 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 1465271 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 1876127 23118801 ~ 23120960 (-) True G34468
AMCG00019451 mRNA downstream 365603 20862132 ~ 20869165 (-) True AMCG00019451
AMCG00019452 mRNA downstream 411011 20820716 ~ 20823757 (-) True AMCG00019452
AMCG00019448 mRNA downstream 458170 20771530 ~ 20776598 (-) True AMCG00019448
AMCG00019446 mRNA downstream 469282 20746707 ~ 20765486 (-) False AMCG00019446
AMCG00019447 mRNA downstream 503787 20728040 ~ 20730981 (-) True AMCG00019447
AMCG00019457 mRNA upstream 4114 21246788 ~ 21293737 (-) True AMCG00019457
AMCG00019458 mRNA upstream 164787 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019462 mRNA upstream 415591 21658265 ~ 21658930 (-) True AMCG00019462
AMCG00019461 mRNA upstream 627341 21870015 ~ 21872862 (-) True AMCG00019461
AMCG00019474 mRNA upstream 962313 22204987 ~ 22216671 (-) True AMCG00019474
TU42823 other downstream 469272 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 1786195 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 5513316 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 6242772 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 6676478 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 1905187 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 8275322 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 8302557 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 8395892 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 8436555 29679229 ~ 29685302 (-) True G35101

Expression Profile