RNA id: AMCG00019457


Basic Information

Item Value
RNA id AMCG00019457
length 6894
RNA type mRNA
GC content 0.45
exon number 49
gene id AMCG00019457
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 21246788 ~ 21293737 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAAATTTAGTAAAGACAATTTAGAAAGTTTAGATGAACGCTAGCCTCGTCTTTAACCCGGAAGCATATGTCATAGCAACGCTGGCGCGGCTGTTGAAAACAAGCCCGGGTTTCTGCCGTTGTGATGCGTAGGTTGGACTACAGTTTAACTGTAAAACAGGACTGGATAGTcctatgtgtgttttttttatttattttttcactagGCACTGAAGTTACAGAATATGGAGCTATCAACCATTTTGAAGAAAATCAGTCATCAACTGGTGGAAATTAGAGAGAGGGCTCTCAAAAACATTATATGTAAACTTGACCATGGCCTAATCTCTGTTCCTGATCTTGTCCAAGAAAAGatgctgtttgtttgtctgcttgAGTGGTTTAATTTCCCAGAAGTACCAATGCAAGGAGAAGTACTGACCCTGCTGGATAATCTAGTCAAAcACCCGACTGCCGCCCAGCTGCTCAGGGAAGTGGGAGCTGTGGAGTTTCTGTCTCTGCTTCGGCCCAGTTTGGAACCAGCGCTGAAGGCTGTCGTTGACAGTATCTTGGATGGGTTGTTTCAGATTCCAGAAATCCCTCCTGATTATCCTGCTATTGTttaccagcagcagcagcagcagcagctggtaACTTTAGAACATGAAGTTGTTCAAATAGACGAAGAGACACCAGTGATGGGATACTTCCAGAAAAACGCAGGAAATACAAGGCAATCCGACATTCCTCCACAAAGAATAGCAGTAAGCGATTCAGTGAAGTGTTTGAAATTTTCCACTTTTCCCTGGTTGGCTTTGACAACAACAGATAGACACATTTTGACATCGAATGAAAGCTCCCTGAGAAGCAGCAACCACAATTTAGTTCGCACAACCTGTGAACTACTTCAGGATGTCATTATGCAGGATTTCCCTGCTGAGATTTTCCTTCAACGGCCAAAGATAGTGCAGAATCTTCTCTCTCTACTGAAGCTAAATGCTGACAGAAGTGGGGCTGGTTACTTAACGCTTCAAGCCGTTGCCTGCCTGCAGCAGTTGTGTACTAACTTGAGGAGCAGGCTTCTCTTTCACAGAGATCCGAGCTTCCACTCAGTCAAGCAAGAATTCCTCGGTGTCCTACTCCCAAGACATCAGAGGAACCCATCGTTCTCACAATCCTTCTCCCGAGGATTGCAGTCCCAGGCCATCTGTGATTGGGCGCACAGTGGCAGCAGTTCTCACAGGGTCGCTACCTCCAGGCTGCCGGCAGCGTCTCCATTAGACACAGCTCATCTGGAGCTGCCGGAGATGGAGAGTGAGGACGCGTTAGAGCTGCGGTTCCGGCAGCTCAGTTTGGCTCAGTTCTGTGTGGCTGTCGTGGAACATGCCTTGCCCCTCCTCAGGACAGAAAGCATGAAAACCTTCCTGTGTGTCCTGGAACTATTGTCAGAGGTTTTGCTGCTCCTGAAAGACAGTATTTCTGAAGATGTCTGGGATGACAGCAGCCTAATTGGATTGGAATTGGCAAGttacaatattacatattttaatgatAAAGACAAGCTACAGGTGTCGATGGATTTTTTAGGAGACCTCTTAGCTCATCACTACAACGCCAGCTCATCAGATCAAACAGAATCTGTTTTAGTTCACCACAGAATGGCGTACACCGGTACTGCAATCTTTACCATCCGGATGCTGCAGTCGCTCTTACCAGTGGAAAAGTCTAGTGAAAATTTACCAGAAACTACAGTGGAGGGCCTGTTTCTCCTCAGTATGGATATGCCGTTCAGCATGGTATTCCCAAGCATTCATGAATCGGCCACAGCCTACCTGGAGCAGGCCAGCTCCGAGAGTTACAGCACATACAGGAGGGGAGACAAAAATTGGCTGGAACTGGTGGAACTAGCAGATCAGGCCATAGATGGCTTTCCATATCATCAACACTTGCCTATTGTCAAGGAGTTCCTTGGAATCTGTTCTTTCATCTGGAAGTCTGCACAGTCAAGTCCTCTACTTCAGACCGAAAGTCAGAAGGTTTTTCTTAAACTATTGTCCCATCCTCTGCTCTCTGTGAAGATTGAAACCTATGCTTGCACACTTAATATTATTAAGGATTGTTTGGGAAtcaaaaatatcacaaaacCTGTGTCGTCTGTCTGCCAAGGAGTTCATTTTCTTCTGCATGTTCGTGTTCTATATGAAATTTGCACATTTGGTCTTCAGGATAAAGCAGAGAAGGTGAATTCTGCTGCCAAGGACATACTTCTTTTTCTGATGAAGGGACAATTGATGATGACAGCTCTAACTTGGAACAAATTCATTGAAGCAGTATATCCCATCATCCCCATATTGCAGGGTTATGCAAGCACAGAAGATGTGTTGGGAAACTGCGTTCTGCTCCTGAGTGAGACCTCAAGTGAAACTGGAGATGGGATGATTCCGAAAACCGCCAGGCTGAGAGCTGCTCTAAGACTTCTTTTCACCAAGCAACAGAAGGTACGAGACATAGCTGTTAAGCATTTAATGTGTCACGTCACCAACGCTGAAGGTGCAAGTGCTAAACGCCCATTATTGGAAAGTGGTGTGCTGTCAACTCTGCCTTCTTTGTATGTTGGGATCAAGTCAGTTGACATAAAACTTGATGATGCAGAAAAGTCTTTCTTCAAGATGGAGTCTGTCAGCAAACTTTACAATATCCTCACTTCAGAGACTGTTGACCTTGTACTCAGGAAATCTGCAGCAGAACAGCTAGCTGTTATTCTTCAAGATACAGCGATGCATGCAGTGCTGAAGAGCCTAGGAGTGACAGAAAGAGTAATAACCTTTATAAATGAAAGCGTAAACCGCAGTGTTAAGAATATGGACTGTCTTCTGGAGCCTTGCCTTTCTATTCTTCGTAAGCTTATGTATGCAGATCCAGTCCTACGGCACTCCCTGGCTCAGCAGCCTTCTTTCTTCATTATGCTCCTGAGAGCTTCCTTAatagtaaaagaaaatggaGGGAACTTGTCTGACGCTGCAgcattgatgtgttttttgctCTTTGATGAAGTTGCCAGAATGGATATTTGgaCAGATGATCAATCAGTCTGTGCAGTATCACCTCCTCCATTTTCTCTCCCTGTTTGGATCGTAAGAAGGTACAATCTGCCATTTGAAGTGCTTGCTCATCATGTAGTCAGTCCTTACTGCACTGTACTTCCACCACACCTGGACCTGTTAGCTTTCAAGCCTGCCTGGGAGATGCTCCAGTTTGCTTGGAATCGAGCGTGGTTCGGTGGGATTGATAACCTCCTGGATCAGCTGAAGAGCCATGGAACAGATTTTACAGAgttcCTATGTGATTTGAAGATGTCACCATCTCAAGTTGTGATGCTGAATGTGATTCATATTACCAGTGGCATTCGGGACTGTTTGCAGTGTATCCACACCGCAGTATCTCACAGTACTGTGAGTTCTGCCTTAGCGAGAATTCGCTTCTATCTTCTGAATGACAAGTTGGGTCTGAAGCAAGGTGCAGACAGTACTAAAAACATCTTGAGCACTCTGAAATGGCACAGTGCCATTGACAGGTTTCTTCAGGTTCGCCCAGCATGCAGAGAGGATGAGAAACTTCTTGTGGATGTTGTGGTTTTTCTGAGCAAGTATTTCAAAGAACGGAAGTCAGAATCAGATTATGAGGACCTCCGGTGGATTTTAGAGCTAGTTCTCAAACAGGATGAAACAAATACCATACTAaacttaataatacaaaaggaatCCCAAGTGCAGGGTGAAGTCGAAGAAATCCAGGCGATCATCAGCCAGAAACTTCAGAAAGAGCTAATGGTGTTCTTCAGTACCTTACTTACCTGCGTCATGTATGTTTCTGACAGgatGTGTATGGCCTTTGCAGGACCTTTTGAGACGCAGTTGGCTATCAGACTGCTGCAGTCCCTTAGAGTTTCAGATGCTCCACACTTCTATGGCCTTCCTTCACTTGAGAGGACATTGAAAGGGATGGTGCATGTCACCGTGCTCCCTGGATGGAGCTCACACTCCCCCTCTGTGGAGCCAGATTCACTCTGCATGAAATACCTAACTGGCCTTCTGGAGGTTATATCTTCATTTTACGTTGAATGGGGGGGGAATTCCATGTCTTTCATGGGTAAAGGAGTCACAAAGAATGCAGTTCTCTGCTTACTTCACTTGTCTCATGAAATGATGGCAGAAACAAAGAATAAGGACTGGGTGTCACTTTGGTCTCTGTCAGATGACCAAAACACTGAAGAACAGACAGCCTCTCGATTAGGGTTGGCTTGGCTTATCCCATTGTGGGTTGATCGGGACCCTGAGGTAAGGTTTGCCAGCCTTGGAGTTGGATCAGCGTTAACCTCTGTGGAAAGTGGGTGCATTGCCCTTGCTGCCAGCTGCCAGAACATTTCTGGAGGATTGTGGGGAACCGTGCTGAACATCCTTCTGGACCAAATGGAATGTAGCATGGTCCGCAGAGAGgCAGCATTTATTCTTCAAAACCTGCTGGTGATGCCCATGCCTGCTAATACTGAGGAGTCAAAAGACTTTGCTTGGCAGAGCCCGTGTGTGCATGATGAAGATTCGGGCCTGTCCCTGGTGGGCTTGCCTGCTCTTCAGGCCCTTATCTATCACTGCCAGTTTTTCGATCATACCAATCAAATGGTGAAAGCCTGCTATCTGGGCCGGCATTCCTTTGATTTAAACTTCTCACAAACTCCAAGTGATATCGTGGGAAATTATGTCAATGAAGATTTTGATGACTCAATGAGGCATTGGAGGGGCCCACCCAGCATTTCAAACCAAAGCCACATGTCAAGCTCTCTGTCTACATCCAGTACTGTAATACTTCCTGAAGGTACAGCAGAAGAGCAGACATCTGTCCTATCGTCCTCCAGAGTTCCTGTTCCAGAAACACCAGCCAACAGACTGATGGCTCAAGgTCAAAGTGATACAGACATGACAGATTCCTTAAGCTCACGGGACTCCAGGGTTTTAGAACAGTCCTCAGATCACTGTGTTATTGTTACACCCCATCTTACAGCAGCCATATGTGGACTGTTGACCAACCTGTTGGCTGTCTTACCAGATTTCACATTAAGTGCAATAAAGCAGAATCAGATCCTTGTATCTCTTGCCAGtttgattgaTGCTGGCATTCTGGAAAAATGTTTCTGGGAGCTTAGATCACCTGCTCTACTTCGAGGTGACCGTGAAGATATAACAAACCAGGTGATCAGCCTTTTCCAGTGCCTATCCAGTTTCTCCAAACTACTTCAGTCTTGTTTGGTCATAAACCCAGAACTGACGTATCAGAAGGACTTCATCAACCCATTATtgatcaatgtatttaatattctcACACTAAATCTCAATGACATTGACGCTGGGACAAAATGCACAGTCTACCATACTTGGGCAGACTTGTTTATGCTTCTGGCGACACTGTTGAAGAAGAGCGGTGATATGGCTTTCCCATCTGTTGCTGTAGTTCTAGGAAAGCAGTGGCATTCATTTGCAGGTACTATTTCCATATGTGTCGATCTTTCCTCCACACATTCCTCCCTGTACACTTCAGCTCTGCAGTTCTTGTCTGTGGTGCTGTCTGAAGAGGCAAAAAGACAGCTGGTAAATCCTGCCCAGCTGAACTCTGTGCAAAAGACCTCATTAACTGAGATCCTCAATGGTTCATCTGGAAGCCAATTATGTGAAGTGATACTGCAGagttttgagaagaaaacatttgaagatGGTTTGAAGAAAATGTCAGCAAGTGCTCTGATGTCATTGCTTGCTAGCAGTTCAAGTGCACAAACCCATGCTTTAAAAGCTGGCCTCATTGAGAGCTCTGTAGAGCGAATTAAACACATCCATGCACAACTGAACCTAGAATCCCTGAAACCTGGAAAAGCtatgcaaaagaaaaagGAGGAAAACTGTATGAGAGAGTTAAAGATGATATTGCAGATACTGAGAAACTGTCTTTATCATCATGATGAATGCAAAGTTGCAGCGACCGATTCTCGCCTAACTTCTGTATTGTATGCCCTCTGGCCTTGGTTTCTGTTGGATGATCCTGTAATGGAAGCAGCTTTGGAACTTCTATGTGTCTTTACAGCTAATTGTACCACAGCTTGCAGCTCCCTTTGCTGGAGTAGTGCAGGACCGAACAGTTTTCCAAGAGGTCCTGCAAGTACCTCTCTAATGCACAGCATCATGAAGCTTGCTACCCAGAAATCTCCTGAGAACAGCAATATACAGCAATTGGCTTTCTCTCTGCTCTCCAATCTCGCCATTTGTCACGACTGTAAAGGGCTTCTTCAGaagAGCAACTTCCTTCAAAACTTCCTCTCCTTGTCACTTCCTAAGCCAGGATCTAAATTGATTAGCCCCTTGGTGAGCCTGTGGTTAAAACTTTTACTGAACATGTCCTTTGGAGAAGACGGACAACAGATCATACTGAAGATCAATGGGAGTTTGGAGCTGCTCATAGAGATGTCTCGGTACAAACCGCGCAGCAGTAGGCCTGCAGCTCTCCTTATTCTGCACAACATCTGTTTCAGTTCGACCAACAAGCTAAAGATTCTGGCTAACGATAAAGCAGTGGGAGTGCTGTCATCCTGCTTGGAGAGTAAACTTCCAGACATCCAGGCTATTGGAGCTTCAGCCCTGTGGGCCCTGCTTCATAACTGTCAAAAGGCAAAGGTGACTTTAAAGAACCCGTCCATCAAATCCAAAGTAGATGACGCATACGACATGGCAAGAAAAGAATCGGCAAGCGCCAATGATGAACCACTGATTTCTTACCTACTTAAGTGTCTTGAAAAACTAACCTTCCTTTTGAACAATTAAGAAGCATTTCAATTGTGAATATTCTTCATTTCTACCACTACTAGAAAG

Function

GO: NA

KEGG:

id description
K16484 RTTN; rotatin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42753 lncRNA downstream 697088 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 1765820 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 1945241 19294812 ~ 19301547 (-) False AMCG00019417
TU42915 lncRNA upstream 144178 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 252471 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 1414208 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 1414208 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 1825064 23118801 ~ 23120960 (-) True G34468
AMCG00019456 mRNA downstream 4114 21234768 ~ 21242674 (-) True AMCG00019456
AMCG00019451 mRNA downstream 377623 20862132 ~ 20869165 (-) True AMCG00019451
AMCG00019452 mRNA downstream 423031 20820716 ~ 20823757 (-) True AMCG00019452
AMCG00019448 mRNA downstream 470190 20771530 ~ 20776598 (-) True AMCG00019448
AMCG00019446 mRNA downstream 481302 20746707 ~ 20765486 (-) False AMCG00019446
AMCG00019458 mRNA upstream 113724 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019462 mRNA upstream 364528 21658265 ~ 21658930 (-) True AMCG00019462
AMCG00019461 mRNA upstream 576278 21870015 ~ 21872862 (-) True AMCG00019461
AMCG00019474 mRNA upstream 911250 22204987 ~ 22216671 (-) True AMCG00019474
AMCG00019473 mRNA upstream 1274206 22567943 ~ 22580204 (-) True AMCG00019473
TU42823 other downstream 481292 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 1798215 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 5525336 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 6254792 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 6688498 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 1854124 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 8224259 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 8251494 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 8344829 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 8385492 29679229 ~ 29685302 (-) True G35101

Expression Profile