RNA id: AMCG00019461


Basic Information

Item Value
RNA id AMCG00019461
length 819
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00019461
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 21870015 ~ 21872862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGATCACGCGAGCAATCTGAGGACCATCCTTTTAACCattgagacacacagagagatagtgtgtgagacagagagagtgagtgtgagagagataggagagagagagagagagagagagagagagagggttaggTTGGAGCAGGTGATCGAGCCACAACAACCCTCCAAGGGGCTGATCGTTAAGATCAGTGTGCACAGGATTCTTGTCTTGATCATGGTGCCAGCAAGCTGTCCTGGACCTTATACCATGCTGGCGCTGGCCCTTCTCCTGGGATGTGGCGCTACTTTTGCCCTGGGACAGAATGACACGGAGCCCATCGTTTTGGAAGGGAAGTGTTTGGTGGTTTGTGACTCGAACCCCTCCTCAGACGGAGGGGTCACCTCCTCGCTTGGGATATCTGTCCGATCTGGCAGCGCCAAGGTGGCTTTCTCCGCCGTTAGGGGCACCAACCACGAGCCTTCTGAAATGAGCAACACAACCATGACCATCTACTTCGACCAGGTATTAGTTAATATTGGCAACCATTTCGACCTTAAATCAAGTGTATTTCAAGCTCCAAGGAGAGGAATTTACAGTTTCAGCTTCCATGTGGTCAAGGTCTACAACAGACAGACTATACAGGTAAACCTGATGCAAAATGAATACCCAGTCATCTCAGCGTTTGCCGGGGATCAGGATGTTACTAGAGAGGCTGCCAGCAACGGAGTGCTGCTGCATGTGGAGCGGGAGGACCGGGTCTATCTCAAACTAGAAAGGGGTAATCTCATGGGCGGATGGAAATACTCGACCTTTTCTGGCTTCTTAGTTTTTCCTcta

Function

GO: NA

KEGG:

id description
K24235 CBLN; cerebellin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42921 lncRNA downstream 323491 21546208 ~ 21546524 (-) True G34283
TU42915 lncRNA downstream 431859 21437915 ~ 21438156 (-) True G34277
TU42753 lncRNA downstream 1320315 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 2389047 19467076 ~ 19480968 (-) True G34006
TU42514 lncRNA downstream 2568468 19294812 ~ 19301547 (-) False AMCG00019417
TU43098 lncRNA upstream 835083 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 835083 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 1245939 23118801 ~ 23120960 (-) True G34468
TU43155 lncRNA upstream 1337379 23210241 ~ 23286999 (-) True G34476
TU43184 lncRNA upstream 1703665 23576527 ~ 23578285 (-) True G34502
AMCG00019462 mRNA downstream 211085 21658265 ~ 21658930 (-) True AMCG00019462
AMCG00019458 mRNA downstream 461185 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019457 mRNA downstream 576278 21246788 ~ 21293737 (-) True AMCG00019457
AMCG00019456 mRNA downstream 627341 21234768 ~ 21242674 (-) True AMCG00019456
AMCG00019451 mRNA downstream 1000850 20862132 ~ 20869165 (-) True AMCG00019451
AMCG00019474 mRNA upstream 332125 22204987 ~ 22216671 (-) True AMCG00019474
AMCG00019473 mRNA upstream 695081 22567943 ~ 22580204 (-) True AMCG00019473
AMCG00019476 mRNA upstream 715671 22588533 ~ 22590655 (-) True AMCG00019476
AMCG00019486 mRNA upstream 769788 22642650 ~ 22643552 (-) True AMCG00019486
AMCG00019487 mRNA upstream 797785 22670647 ~ 22743792 (-) False AMCG00019487
TU42823 other downstream 1104519 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 2421442 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 6148563 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 6878019 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 7311725 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 1274999 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 7645134 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 7672369 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 7765704 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 7806367 29679229 ~ 29685302 (-) True G35101

Expression Profile