RNA id: AMCG00019468


Basic Information

Item Value
RNA id AMCG00019468
length 6965
RNA type mRNA
GC content 0.43
exon number 17
gene id AMCG00019468
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22226347 ~ 22248682 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgtaatgtaaaatacttcaaacaataaaacagtattatcagcttgctgcctcctcccttgagacagttttgttatacagtaacccatCCCCCTTGGGCACTGCTCAAGGgctgcaaggtcgcgcgggagtcctagctcccagcaaatgaagacgaacctgcgctgacgtcacgttttatggaacaggatgtagGAAGGGACCTctttctgagtgacaagcgcaggggccaatggcagctttgatagagtgatgtttcaatcaggttcctacggcagtgtgcagaaacccctcccccttgggcagtgcttcctttttcagataactggggttgcatttgcaatctATCGATGTATACAGCTTATGAATTAGAAGTACAATGATTACTAATCACCAGAGGAAGAGAAAAGGATGTCTGATGTGTTTAACCACTAGAACTATAACTTGTTGACTTTTTGGAGATATAACTCTGCTGACTTTAATCCAGAGACATTTCCCATGTCAGGTGGTGCCCGATCAAAACAGAGGCAAAGCAGCGGTTCATCCAGAAAAGACACTCACTCACAAGAACCACCTCATTCAGCAAGAGGACAAACACAACAGAGAGATAAACCGAAGACAGAAGAATGGCCGTTTGGGAGAACCAGTAATCCCAAAGAGGACCCTTTCAGAGGCAACCAAGACAGAAGAGGATTCCAATCTCAAGACAGAAGAGGCAGCAGGACTCCGTCTCAAGGGAGTCGTCCTGGAGCCAGTGATAAACCTCAAAGAAGACAAAACCATCGTGGCCAAGGTGGACGTCATAAATCTCAAGGAAGGAATTTGGACAGTTTTCCAAATCAATACAGTGGCTCCACTGGAGATGGTCGCAAACCCTTCATAAATCACAGACCTCAGAGTATTTCAAGAAATCACAACACAAGGCAAAATGATGGCTTCAACATTGGTCAGGGACAAGGTTATCAACGGTTCTCAGGAAAAAGGGCTGAAAGTCAGCCCAACCTGTTAGACATGAATCTTGACTCATCTGACAGTGAGCAAGGTGGCAGAAGTGAGACGTTCAACAAACGAGAACAAAGACACAATGTCTGTTTAAACTACAGCGCTCTGCAAAAGATTTTGCGAATGGAACCGTCTGAAGTGGTCATGATATTGGCAGCTCCACGAAGTGGTTTGCAGGAATTTCTAAGCAAAGAAGATGCAGCTGATGAAGTCATATCTGTAGCTCTTGAAGTCCTCATTAAGGCATGCAGCAGCAGGACCAACAGGGAGAATTTACAGCATCTCCTTATAGATGTAAAAGAATCAAACTTTCTAAAGAGGATCCTCCCTATGTATGTAATGAGAGTGGGTAGACAAGGTGATCCATTACAAAGAGAGCAGAGCATTGTGAAACTTAATCAAATATTGACCCTCCACCTGACCTTAATTAGTGTGTTTCCAGCTAGCTCAGTCATTGATGTGTCTCTTATTGCAGCTCTTCTAGAGGGTGAAATAAATTACTTACGGTCAACAGGGCTCTACATTCCAGAAGAAACAGAGAACAACATAAAAAACCTTCTAAGAATCATAGCCCATCTGCAAGAGAAGAAACGTGAAGGTACACTCAAATCAGACAACTATAGATACTTAATGGGAGCTCAGGATGAACAAGGCATAGAGGACTTCAGAAATATGTCCATCTTTCCAACATATGAAGATATACATATTACTGAAAAACCATTTATGAGGCCTAACATTGTTGATAAGAAATTTGAGAACAGCAACATTTACCTTGATACTCATTTCCGTCTCCTACGAGAGGACTTTCTGAAGCCTCTGAGGGATGGCATATCTCAGATCCTCAAGTTTGATGGAAAAGACCTACACCATGGAAGATTCGATGACATTCGCATTTATTTCAACACCTTCATTCTTTCTCCCATTTGTACACCTAAAGGGATCATCTACAGAGTTCggtttgatatcaaaaattTGAAATCCGTTAACTGGGAAAACTCCAAACGACTTTTGTTTGGAGCACTCGTGTGCCTATCTAGAGATTACTTTGAAACAATGATTTTTGCCACAGTGGCCAATCGTGATGTAAAAGAGCTTGCTCATGGCATTACAACCTTGGAATTCACTGAAGAGAATCGACTAAAACTATCAGATATTTCTCCAACGGACACTTTCCTAATGGTTGAAACAACTGCATTTTTTGAAGCCTATCGTCATGTACTTGAAGGCTTACAGGAGATGGCAGCTGAAGAACTAccaatgcaaaaatatatagtcAGTTGTGATTCTGATGTCTTGCCTCCAAAGTACCTGAGAAATCATCCACATGGCTACAGCTTTGAGGCTTTGATGAATGATCGCCCTGTCAAAATACCAAACCTAGCTGAGATCAGTGATGGGAATCAGGAAGCGAGCATTCTAGATTTCAGAAACTGGCCCAGAAAGGAAAAGCTAAAGTTGGATGACTCTCAGCTGAAGGCAGTGCAGATGGCCTTAACTAAGGAGCTAGTAATCATTCAAGGTCCACCAGGAACAGgCAAGACATATGTTGGTCTAAAAATTGTCAAAGCACTTCTTGCTAACGCCCATATTTGGCGATCTGGAGTTCAAGCTCCTATTCTCGTTGTCTGCTACACAAACCATGCATTGGATCAGTTCTTGGAAGGCATCTACAAGTTTTTTAAGGACCCAACAGGACTGGTGAGAGTGGGAGGAAGAAGCACCAGTGAGATTCTGAAGACATTTTCTCTGAGTAATCTAAGAAGAGCCGATCAATTTAAAAGGAAGCTCCCAGGACACCTGCGAGCCATGTATGCAGAAcTAACAGATGAAAGGAAGGCTGAGGAACATCAGATTGGGAAAATTGGAGCTCTGTATGAAAGTTCTGTGAAGGGTGTTCTTCATGAAAGTGTCCTggaaaattacattgttttaattcatggGACTACCCTGGGGAAATTAAAGTGCACAGGAAAGAATTTCTCACACAGGAAGCAGCCATCAGTGATGATGGACTGGCTGGGAATCTCCGTGCTCAGTCATGTTTCAAGACAAATGGGTGAGTTTGAAGAACTTGATCCAGAAAGTCAGCCTGAaggtgaagaaaataataatgAAGAAACTGAAGGTGATTCAGGAAACATAATGGATGAAGAGAGGAGCTATTATCATGGTGATATTGAGAAAGCAACTGAACTTCTGCAGCTGGAAGACACTGCTGAGGATGAAGACAGTATTTGTGAGGTTGCCAGTGTGACTACAGAGGGAGTGGAGGCGGCGGCAGATCTAATCCAAGTCACAGAGGAAGCCGAACTGGTTCAAGCTGAGAGAATGATGGAGGGGGATGATGTTCAAAAGCACATCCAAAATGCACGGAGGAGGCTTGCTTCAATGCAGAACATGGTTCTTGCATATGCACCTGGTGTGGAGGAAGAACAGGAGCAGAGTCAGGAGAACTACGATGAGGGTTGGGAGATACCAAAAGACatgaagaaaaaactgaatCAGATTGTAAAGCAAGAGCTGCAGAAAACTGAACATATGTCGCTGGAAGAGGCCGAGCAAATCCATGACCTGTGGGCCCTGCCGTGTAAAGAACGCTGGCGTCTATACAGgctttgggttTCCCAATACCGAAGTGACATAAAGCTACAGATTCTGGAATGTGAGAACCGGTACCAAAGAATAGTAAACCGCATTGTGGAACTGCGAAACCGGGAGGACCTGACTGTCCTCCAAACGGCCAGTATCATTGGAATGACCACCACATGTGCAGCCCGTTACAGGAAGGTCCTGCATGATATTCAACCCAAGATTGTCATTGTTGAGGAAGCAGCTGAAGTGCTAGAAGCTCACATAGTGACTACGTTGACACCTACCTGTGAACACCTCATTCTAATTGGGGACCACCAACAGCTTCGTCCAAGCGCTACAGTGTATGAACTAGCCAAAAATTTCAACTTGGAAGTGTCCTTGTTTGAGAGGCTTATAAGAATGAATGTACCATACATTCGGCTGGACTATCAGCATCGTATGCGGCCGGAAATTGCTCGGCTGTTAACACCACACATCTATAGTAATTTGGAGAACCATCATGATGTCTATCTGTATGACAGTATCAAGggAGTTTCCACAAATGTCTTCTTTATGGAACACACGCACCTTGAAGAAAACATTCATGAAGGTCGAAGCCACCAGAACCTTCACGAGGCAAAATTTGTGAAGTCACTGTGCTACTACTTAATCTGCCAAGGTTATGAGCCTTCTAGGATAACAGTCCTGACAACATACACAGGCCAAATGTATTGCTTGAAACAAATCATGCCAAAGAGCAAATTTGAAggagtaaatgtgtgtgttgttgacAGATATCAAGGGGAGGAAAATGATATAATAATTCTTTCCTTGGTCAGGAGTAATCTGGAAGGGAAAGTAGGGTTCCTAAAAATCACAAACCGAATCTGTGTAGCTCTGTCAAGGGCAAAGAAAGGCTTGTTTTGTATTGGGAACATGTCAATGCTTTCCAGAGTTCCTCTTTGGAGCAATATCATGAACGTGTTGAGCATCAACGGGCAGATCGGGGAGATTTTAATGCTGCGCTGTGAGAACCACCCCGAAACCACTACCTTGGTGTCTGAAGAGAAAGACTTCCTCCAGGTACCTCTGGGTGGATGCTCAATCCCCTGTGAGTATCGACTGGACTGTGGCCATGTCTGCACCAGAAAATGCCATCCATTTGATTCAGAacacaagacatttaaatgcatgaagcCCTGTCCAAAAACCTTGTGCCAGGACGggcacaaatgcaaaaagaaatgctttgaggaatgtggaaaGTGTCAGGTGATGGTCACTAAAACTATGCCCAAGTGTGGCCATGGGCAGCAGGTCGCCTGTTCAGTTCCTGTAGAAATGTTTGCGTGCCAGATGCCATGTGATAAAAGCTTACCTTGTGGTCACAAGTGTATTCGGGCTTGTAGCTCCTTTTGCACTCAGAGGTGCCCACAGAGAGTGACAGTTGACCTAGAATGTGGTCACCAGGTGAATATGCAATGCTATGCGAAGCAAGAGgctgaagaaaataatatgaagaTTGATTGTTGGGTGAAATGTGGGGCACAGCTGGATTGTGGCCATGTCTGCTCTGGAAACTGCACTGTATGTTCCATTGGAAAGTCCCATATCCCATGCCAGTCCCAGTGTGAAGAACGGTTGATTTGCTCTCACCAGTGTTCAGAGGCATGTTTAGAGGCATGTGCTCCCTGCCGCAAGACTTGTGAAAACAGATGCTTTCATAGGATGTGTGACAGAAGATGCTGTGATCCGTGCCTCCCCTGTAAGCAGCCATGTGGCTGGGGCTGCAAACATCATCAGTGCACCAAGTTGTGTTTTGAGCCCTGTGATAGACCACCATGTCAAAATCCATgcatcaaaaaaaataaaaaatgtaagcatCCATGTATCGGGATGTGTGGGGAGCCATGTCCAAATAAGTGTCGTGTGTGCCACGTAAATGAGGTCCAGGAGCTGTTTTTTGGGAATGAGGCTGATCCAGGTGCCCGCTTTGTACAGCTGCTGGACTGCTCTCATATGTTTGAGGTGACTGGGTTTGACACCTGGATGATGCAGCCTGAACAGAACGGGGAGATTAAGATGAAGGCTTGCCCCAAATGCCTCACTCCCATCCGTAGAAGCGTACGGTATGGTCCTATTGTCAAACGACTACAGCTCAATATTGAGAGCATGAAAATGAAGACAGTGGAACTATGTTCAGAGCAACTGCAGAactcactgagagagagaacagaggtGGAGAGACACTTCCCACACTTTAACTTGTCTGAATTAGACCTTTCCACATTAGGTCTTCAGCAAGTTTTGTTAATCGACAAACAGGTTAGTCTTCTCTCCAAGCTGGctgaaatcaaagaaaatgctGGACTGGCCCTGCCGAACATGTTGTACAAGATTAAAGTCAACAAACAAATTGAACATTGCAGTAATATGATCTTCAGCAAAAATCATGAAATATCTGAATACAATGGAGAAATCAAAAGGATTGCGCTCTTGGCTGAGGCCTATGCATTGTCCTGCATGTCTCAAATATCTTTGTttccaaggaaaaaaaaacagctggtggagataatattaatactgaatGACAGTGTGATGAAACTTAGAGAAGGAGAAATTAAAAAGTTGCAAGACAAGCTTGACAGCATTGCGAAGAGCCAGCTGAAGATCTTGGATGAAAAGAAGAGCACAATGCTTCATTGTGACATTTTTAAGCAGAATCACTGGTTTAAGTGTAGTGAGGGGCATGTTTACTACACTCAGGGTGCTGAGACcgagaggaagagaagagaatGCCCAGACTGTTCAGTAGAGTGAGCTGAAAATATTCAATGATATCCTATGCAGGGATATGGATGAATAGAGAGAtacaaaatcttaaaatgtcaatacaaatgaagaaaacaaatgtactggTTAACATAATTAAGACTGTTATGAATGGACTTGAGCTTCCTTCTCTGGTTGATTAATTTCAGAATTCAATGTTGTGTTCAATGTTCAATGTGTTAAATCAtgtgaaacatgtttttatggCAAATACTTTACAACTATGGCTAAATATAGCACCAGCTTGTATGACTATAGTTAGGTTATAGAGTGTTTTGGAAATAGTTCAGTTAGCTTCCTTGTCAGAATCCACCATATTGAAAACAACAGCCACTctgtattattctgaattatATTGCATTAATGGAGAATAAAAAAGCCTCAATATTACAGtagttattgtttatttgaaacatgCTGTTCCTTTAATTATACATTGCTTCGTTTATTCTGCAAACATTAGTCAAAACAGTAGGAGATTCAGTTCATATATTCTTATAGCATGCTTCATGTGACATGattgtgtaataaatacatatccaataaaaaatctaatcaaa

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42916 lncRNA upstream 764456 21461682 ~ 21461891 (+) True G34278
TU42861 lncRNA upstream 1135931 21090144 ~ 21090416 (+) True G34235
TU42825 lncRNA upstream 1449731 20771526 ~ 20776616 (+) True G34204
TU42811 lncRNA upstream 1479376 20672987 ~ 20746971 (+) True G34192
TU42802 lncRNA upstream 1591075 20633077 ~ 20635272 (+) True G34183
TU43038 lncRNA downstream 327292 22575974 ~ 22577472 (+) True G34378
TU43105 lncRNA downstream 531549 22780231 ~ 22783116 (+) True G34432
TU43106 lncRNA downstream 540326 22789008 ~ 22789463 (+) True G34433
TU43108 lncRNA downstream 550718 22799400 ~ 22799718 (+) True G34435
TU43109 lncRNA downstream 569461 22818143 ~ 22818460 (+) True G34436
AMCG00019467 mRNA upstream 15891 22204665 ~ 22210456 (+) True AMCG00019467
AMCG00019471 mRNA upstream 41583 22172808 ~ 22184764 (+) True AMCG00019471
AMCG00019472 mRNA upstream 118019 22106161 ~ 22108328 (+) True AMCG00019472
AMCG00019463 mRNA upstream 326636 21894877 ~ 21899711 (+) True AMCG00019463
AMCG00019464 mRNA upstream 332376 21890063 ~ 21893971 (+) True AMCG00019464
AMCG00019465 mRNA downstream 21827 22270509 ~ 22284359 (+) True AMCG00019465
AMCG00019466 mRNA downstream 50191 22298873 ~ 22305649 (+) True AMCG00019466
AMCG00019469 mRNA downstream 141488 22390170 ~ 22454529 (+) True AMCG00019469
AMCG00019470 mRNA downstream 334078 22582760 ~ 22588134 (+) True AMCG00019470
AMCG00019475 mRNA downstream 367223 22615905 ~ 22643226 (+) True AMCG00019475
TU42780 other upstream 1615458 20607474 ~ 20610889 (+) False G34170
TU42783 other upstream 1615458 20607474 ~ 20610889 (+) True G34170
TU42785 other upstream 1615458 20607474 ~ 20610889 (+) False G34170
TU41862 other upstream 6144404 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 7056506 15164348 ~ 15169841 (+) True G33283
TU43058 other downstream 366941 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 1423443 23672125 ~ 23695801 (+) True G34511
TU43819 other downstream 7052273 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 10075718 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 10081955 32330637 ~ 32392976 (+) False AMCG00019609

Expression Profile