RNA id: AMCG00019474


Basic Information

Item Value
RNA id AMCG00019474
length 753
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00019474
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22204987 ~ 22216671 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTTCGCAGTTGGAGTAGAGGGGGATCCTGCAAAAATCAAGGAGGGAGAGCTGAGCATTAACCCAGTCAAAATGCAGCTCCTCTCTCCTTGTTTGCACATGCTCCCATACCTTCACTTTGGGCTGAAAGATCAGGAGAAAAGGTATCGTCAACGATATCTTGATTTGATCACGAATGAGTCTGTGACACAAAAGTTCATTAAGAGAACTAAAATTATACAATACCTAAAGAAGTTCCTGGATAGTCTTGGATTTCTGGAGCACTTGAAACTGGATTATTTTGCCATTTCGTACTCCTACTCTGGCACCGTTCTGAAGAAGGACTTTCGGAACGATTTGAAGAACAAGCTGAGCAATGCCTTCACTGAGCTGAATGATCCTCACAAACAGCATGAGCTTTTTGAAGACCAAGCCAAGGTTCTTCTGTTTCCTGCCATGAAACCAGATGACAACAAGCAAACTGAGAAGGGCAGGAATATGAGCAACTTTGGGAGAGTCGCCCTGGCGTCTCTGCACCGACACCTGTCCAGCCCTGCCATGTTTGCCCTGGTTGCCCGTCCTCAGGGTGCTGTCGGTGGAGATGCCTTTGCTGGGCAGGAGCAGGACAGGTCTGCAGGGCCGCACAGCGATCAGAGACGGCTCCGTGAGGTTGCAATAACCAGTCCTAAACGCTGTTTTCCCATTGTTTTGCAAGGATATGCTACTAGTGTGAGCTGGTTTAAAGAACTGAAAAATACAGCTATGAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42921 lncRNA downstream 658463 21546208 ~ 21546524 (-) True G34283
TU42915 lncRNA downstream 766831 21437915 ~ 21438156 (-) True G34277
TU42753 lncRNA downstream 1655287 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 2724019 19467076 ~ 19480968 (-) True G34006
TU42514 lncRNA downstream 2903440 19294812 ~ 19301547 (-) False AMCG00019417
TU43098 lncRNA upstream 491274 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 491274 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 902130 23118801 ~ 23120960 (-) True G34468
TU43155 lncRNA upstream 993570 23210241 ~ 23286999 (-) True G34476
TU43184 lncRNA upstream 1359856 23576527 ~ 23578285 (-) True G34502
AMCG00019461 mRNA downstream 332125 21870015 ~ 21872862 (-) True AMCG00019461
AMCG00019462 mRNA downstream 546057 21658265 ~ 21658930 (-) True AMCG00019462
AMCG00019458 mRNA downstream 796157 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019457 mRNA downstream 911250 21246788 ~ 21293737 (-) True AMCG00019457
AMCG00019456 mRNA downstream 962313 21234768 ~ 21242674 (-) True AMCG00019456
AMCG00019473 mRNA upstream 351272 22567943 ~ 22580204 (-) True AMCG00019473
AMCG00019476 mRNA upstream 371862 22588533 ~ 22590655 (-) True AMCG00019476
AMCG00019486 mRNA upstream 425979 22642650 ~ 22643552 (-) True AMCG00019486
AMCG00019487 mRNA upstream 453976 22670647 ~ 22743792 (-) False AMCG00019487
AMCG00019484 mRNA upstream 613476 22830147 ~ 22844539 (-) True AMCG00019484
TU42823 other downstream 1439491 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 2756414 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 6483535 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 7212991 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 7646697 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 931190 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 7301325 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 7328560 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 7421895 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 7462558 29679229 ~ 29685302 (-) True G35101

Expression Profile