RNA id: AMCG00019476


Basic Information

Item Value
RNA id AMCG00019476
length 738
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00019476
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22588533 ~ 22590655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAACGAGGCTAAACCTTGCCCCTGCGACATTGGGGACAAGATGGACTACAGGGGTCTGGGAGAAGAGGTGCAGATTGAGCACATCCAAGCATATGTGACCAAGCCAACATCTGGCACAGACAAGGCCGTCATAGTCATTCAGGACATTTATGGGTGGCAGCTTCCCAACACCAGATATATGGCAGATCTGCTTGCATCTCATGGATATATAGCAATCTGCCCAGATTTCTATGTTGGCAAAGAACCTTGGAGACCTACTGATGATTGGTCAACATTTCAAGAGTGGCTTCAAGACAGGAAGCCAACCAACATAAATAGAGAGGCCGATGCAGTTCTTAAGTATCTGAAGGGAAGCTGTGGTGCGAAGAGGATAGCAGTTGTAGGGTTTTGCTGGGGTGGAGTTGCCACACACCACTTGATCCTGAATTACCCTGAGCTCAAAGCTGGTGTTTCTGTTTATGGAATAGTCCGAGAGACAGAAGACCGGTATAAATTACACAGccccacatttttcatttttgcagaaaatgaccACGTTATTCCACTTGACCAGGTGGCCACCCTGGAGAAGAAACTTCAAGAGCACTGTACAGTGGATTTTAAAGTCAAGATTTTCCCCGGCCAAACCCATGGATTTGTACACCGCAAGAGGGGAGATATAAATCCGAAAGACAAACCCATCATTGAAGAGGCCAGAAAGGACATGATTAATTGgttgaacaaatacatttaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01061 E3.1.1.45; carboxymethylenebutenolidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42921 lncRNA downstream 1042009 21546208 ~ 21546524 (-) True G34283
TU42915 lncRNA downstream 1150377 21437915 ~ 21438156 (-) True G34277
TU42753 lncRNA downstream 2038833 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 3107565 19467076 ~ 19480968 (-) True G34006
TU42514 lncRNA downstream 3286986 19294812 ~ 19301547 (-) False AMCG00019417
TU43098 lncRNA upstream 117290 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 117290 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 528146 23118801 ~ 23120960 (-) True G34468
TU43155 lncRNA upstream 619586 23210241 ~ 23286999 (-) True G34476
TU43184 lncRNA upstream 985872 23576527 ~ 23578285 (-) True G34502
AMCG00019473 mRNA downstream 8329 22567943 ~ 22580204 (-) True AMCG00019473
AMCG00019474 mRNA downstream 371862 22204987 ~ 22216671 (-) True AMCG00019474
AMCG00019461 mRNA downstream 715671 21870015 ~ 21872862 (-) True AMCG00019461
AMCG00019462 mRNA downstream 929603 21658265 ~ 21658930 (-) True AMCG00019462
AMCG00019458 mRNA downstream 1179703 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019486 mRNA upstream 51995 22642650 ~ 22643552 (-) True AMCG00019486
AMCG00019487 mRNA upstream 79992 22670647 ~ 22743792 (-) False AMCG00019487
AMCG00019484 mRNA upstream 239492 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019485 mRNA upstream 286630 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019483 mRNA upstream 365123 22955778 ~ 22975128 (-) True AMCG00019483
TU42823 other downstream 1823037 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 3139960 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 6867081 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 7596537 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 8030243 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 557206 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 6927341 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 6954576 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 7047911 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 7088574 29679229 ~ 29685302 (-) True G35101

Expression Profile