RNA id: AMCG00019477



Basic Information


Item Value
RNA id AMCG00019477
length 1113
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00019477
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22693692 ~ 22702036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aCTGGATTGATAGTAGCCTGTTACCAAGGCTTTGTGGACATCGTCATTGCACTCGCTCAGTGTCCTTATATTGATGTCAACTGGCAAGACAGCGAAGGGAACACAGCCCTCATAACTGCGGCGCAGGCAGGACACATAACAATCTCCAACTACCTGCTCAACTACTACCCAGGCCTTGACATCGAGAGGAAGAATGTGCATGGTTTCACTGCTCTGATGAAAGCAGCTATGCAGGGGAGAACTGAATGTGTCCGTACTCTCATGCTGGCAGGGGGAGATTTAGCAGCAACTGATAATGGGCGGAAGCTAACCCCTCGGCAGTGGGCCCTTTTCACAGGCCGCTACGAAACCGCGTACCTGATAATGCAGCTGACAGCCCGTCCCTGTGCCGAGCAGTTCTGCGATTCCTACAAGCCAGAGTGGCCCCGGCTAAAAGACCTAGTGGCTAAAGCCAATGAGCCCAAGGGTTGCCTGCAGAAGATCTCAGAGACTGTGTGTTCCCTGTTCAGCTTCAATTTTCCCCGTGACCCGGAAGAAGATGGCGTGATGGACCACATGGTACGGATGACTACCAGCTTGAGCAGCCCGTTCATTGCCACTGGCTGCCAGACCGTGTGCCCTGACAGCCCCCCTTGTGTGGGCAAGAGGCGGTACGCCGTGCAGGAGATTCTCCGGAGGCAGCGTGTGGAGCAGCTGAAAAACCACCCAGAGCGCCTCAACAACTACAAGAAGCTCTTCCAGAACTCACGGGTCACTCTGGTCTCCAAAAAGCAAGAAAGGAGGGCTAGCCTGCAGCCCAACAGCCTGACGACGAGTTCCTCCAATGTGCCCACGCGGCGCACCAGCCTACTGCCACTGCACCTTCTGCGGAGAAGCAGCGTGCGGCCTGGCATGGTGGTGCCCAAAGTCAGGGTGTCCAAAGCGCCTGTTGCCACCTACGAGCCGGAGAGGGTGCGCAGGAGGAGCAGCTCCAAGGACAATCAGTTCCTGCAGATCCCCAAATGGAGATACAAGGAGCtgaaagaggaaagaaagaaggcagaggaagaggagaggagaagagccGAAGAAGTGACTCGGAAACATTTGGCCTCAGGGAAGAAGAAGGCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43038 lncRNA upstream 116220 22575974 ~ 22577472 (+) True G34378
TU42916 lncRNA upstream 1231801 21461682 ~ 21461891 (+) True G34278
TU42861 lncRNA upstream 1603276 21090144 ~ 21090416 (+) True G34235
TU42825 lncRNA upstream 1917076 20771526 ~ 20776616 (+) True G34204
TU42811 lncRNA upstream 1946721 20672987 ~ 20746971 (+) True G34192
TU43105 lncRNA downstream 78195 22780231 ~ 22783116 (+) True G34432
TU43106 lncRNA downstream 86972 22789008 ~ 22789463 (+) True G34433
TU43108 lncRNA downstream 97364 22799400 ~ 22799718 (+) True G34435
TU43109 lncRNA downstream 116107 22818143 ~ 22818460 (+) True G34436
TU43112 lncRNA downstream 179144 22881180 ~ 22888739 (+) True G34438
AMCG00019479 mRNA upstream 5415 22670411 ~ 22688277 (+) True AMCG00019479
AMCG00019478 mRNA upstream 36783 22644268 ~ 22656909 (+) True AMCG00019478
AMCG00019475 mRNA upstream 50466 22615905 ~ 22643226 (+) True AMCG00019475
AMCG00019470 mRNA upstream 105558 22582760 ~ 22588134 (+) True AMCG00019470
AMCG00019469 mRNA upstream 239163 22390170 ~ 22454529 (+) True AMCG00019469
AMCG00019481 mRNA downstream 483780 23185816 ~ 23204250 (+) True AMCG00019481
AMCG00019480 mRNA downstream 537640 23239676 ~ 23248099 (+) True AMCG00019480
AMCG00019488 mRNA downstream 864545 23566581 ~ 23575527 (+) True AMCG00019488
AMCG00019492 mRNA downstream 1358286 24060322 ~ 24086481 (+) False AMCG00019492
AMCG00019494 mRNA downstream 1393259 24095295 ~ 24102633 (+) True AMCG00019494
TU43058 other upstream 68487 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 2082803 20607474 ~ 20610889 (+) False G34170
TU42783 other upstream 2082803 20607474 ~ 20610889 (+) True G34170
TU42785 other upstream 2082803 20607474 ~ 20610889 (+) False G34170
TU41862 other upstream 6611749 16043942 ~ 16081943 (+) True G33406
TU43194 other downstream 970089 23672125 ~ 23695801 (+) True G34511
TU43819 other downstream 6598919 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 9622364 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 9628601 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 12138280 34840316 ~ 34851323 (+) True AMCG00019641

Expression Profile