RNA id: AMCG00019478


Basic Information

Item Value
RNA id AMCG00019478
length 1320
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00019478
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22644268 ~ 22656909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACATGACAGACGGGCTCGGGGTTGCTTAGCAGCGCGCAGTAACAGCAGTTTttcaacagacagacagacagacagacagacttacTGACTGCGCTTTTACATCTCCTGCCCAGCTGTTTAACCGGAGAAGACACCCAcagACAGGAGCCATGCCCCCTCCGGACACTATGTTCTGTTCCCAGCAGATCAACATCCCCCCCGAGCTGCCGGACATCCTGAAGCAGTTCACTAAAGCTGCGATCCGGACTCAGCCGCAGGACGTGCTCCAGTGGTCGGCGGCGTATTTTTGTGCATTAGCAAGAGGGGATACTCTCCCTGTCAAAGAAAGACTGGAGATGCCAGTAGCAACACAGAAGACAGACACAGGGCTTACTCCTGGCCTTGTGAAGATCCTTCATAAACAGACCATCCTGAGCGCCATGAAGCACGCGTGTGAAATCCTCACGGAGGACCCGGAGGGAGGAGCGGCTCGTATTCCTTTTGACACGTTTGTGTTCCTCTATACCTACCTGGTGCAGCTAGATGGGGAGATCCCACAGGCGCAGATTGACAGCTTCCTGCGCAGCCTGGAGGAGCCTGTGAATCGTCAAGAAGGGATGGTGCAGCCATCTAACTTTGCCAATCTGGACGGTCTTGAAACGAGTGACTGAAGCAAATACAGTTTCACATGATACAATGTTGCGACCAGTTTTGTGGCTTCTCATTTCCATGTGACATCCCGTGAaccaaactgaaacaaatatggATCTTTGCTGAGGATATTGATGTGGACAATTATATAAGTGACAACATAGAATAATGGAAACAAGCTGTGCGGGAGGACATTATTTGTCACATAATAGGCTTCAGAAGTGTATCGATAAACAGCAGTGTTTGGAAATGCACAACTGCATTTTGGATCAGGAATACAGTACAAAACTAAcgccatttaaaataaataaaaaaacaagaacggTCTTTGGTAAAAATGggtaaagggaaaaaaaaaaaatccaaaagcaAACATGAAGTATGTTtatcatgtatatttatataacgtatatatttttaaatgaaactgaacttataatttcaaataaaagacTTCTATTTAGTTTGAGAGTggaagtttttttatttgtgcgAGGCTTTTTGATCTTTACAAATACGACAGGCAGAGAGACTTTGCACAAGACCGATAGATAAAATGGTaattccttaaaaataatatacaataagcATGCAAAGAACGAATGATTGGAACACTGACAGTTTTGAtaaaggattttaaattgtaaaaatgaaCTTGAAGACCAGAATTAGATGTTCTATATCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43038 lncRNA upstream 66796 22575974 ~ 22577472 (+) True G34378
TU42916 lncRNA upstream 1182377 21461682 ~ 21461891 (+) True G34278
TU42861 lncRNA upstream 1553852 21090144 ~ 21090416 (+) True G34235
TU42825 lncRNA upstream 1867652 20771526 ~ 20776616 (+) True G34204
TU42811 lncRNA upstream 1897297 20672987 ~ 20746971 (+) True G34192
TU43105 lncRNA downstream 123322 22780231 ~ 22783116 (+) True G34432
TU43106 lncRNA downstream 132099 22789008 ~ 22789463 (+) True G34433
TU43108 lncRNA downstream 142491 22799400 ~ 22799718 (+) True G34435
TU43109 lncRNA downstream 161234 22818143 ~ 22818460 (+) True G34436
TU43112 lncRNA downstream 224271 22881180 ~ 22888739 (+) True G34438
AMCG00019475 mRNA upstream 1042 22615905 ~ 22643226 (+) True AMCG00019475
AMCG00019470 mRNA upstream 56134 22582760 ~ 22588134 (+) True AMCG00019470
AMCG00019469 mRNA upstream 189739 22390170 ~ 22454529 (+) True AMCG00019469
AMCG00019466 mRNA upstream 338619 22298873 ~ 22305649 (+) True AMCG00019466
AMCG00019465 mRNA upstream 359909 22270509 ~ 22284359 (+) True AMCG00019465
AMCG00019479 mRNA downstream 13502 22670411 ~ 22688277 (+) True AMCG00019479
AMCG00019477 mRNA downstream 36783 22693692 ~ 22702036 (+) True AMCG00019477
AMCG00019481 mRNA downstream 528907 23185816 ~ 23204250 (+) True AMCG00019481
AMCG00019480 mRNA downstream 582767 23239676 ~ 23248099 (+) True AMCG00019480
AMCG00019488 mRNA downstream 909672 23566581 ~ 23575527 (+) True AMCG00019488
TU43058 other upstream 19063 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 2033379 20607474 ~ 20610889 (+) False G34170
TU42783 other upstream 2033379 20607474 ~ 20610889 (+) True G34170
TU42785 other upstream 2033379 20607474 ~ 20610889 (+) False G34170
TU41862 other upstream 6562325 16043942 ~ 16081943 (+) True G33406
TU43194 other downstream 1015216 23672125 ~ 23695801 (+) True G34511
TU43819 other downstream 6644046 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 9667491 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 9673728 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 12183407 34840316 ~ 34851323 (+) True AMCG00019641

Expression Profile