RNA id: TU43138


Basic Information

Item Value
RNA id TU43138
length 2925
lncRNA type sense_over
GC content 0.33
exon number 3
gene id AMCG00019480
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23233270 ~ 23248099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATAGGCAGCCCtaacatgtaaatattaaacttgAGGTCTCCTGTAGGAGTTTGATAAATCAGTGATCATCAacACTGCTATGTTGAAACGTGTTAGCAATGACTGATGTTGAATCGACGTATGCAGATTTTATTGCTTCTGGAAGAACTGGACGAAGGAATGCATTGCATGACATTCTTGGAGCTCAAGGAGATTTGGAAACTAGTGACTTATCCCTGAAGCTGTCGGAACTTGACATCGATAAAGCAGGTGAAGGAGACGATGGTGAGAAAAGCCACGCCTCTTCTACAGATCAGCCTCCTGCATCTCAGGAGGGGAAACAGGAGGGGAGTTAACGTAGAGGCCTGACTCGGGACACAAGCCTGTCATCTGCCATTTCACAATAACTGTTGGCCAGGAAGGCCTTTATTCTCAAGGACgtttaaggaaaaaaataaaacacactaaaaTGAGCTCCATAAGGAAAAAGAGTTCCCATCACTCTCATCACAGGATGGCATTAGAGTTAATTATGCAGATGGTAAAATCCATACAAATCTGCTCAAGCTCTGTCTTTAATAATGGCTGAGGGATTTTGCAGAGCTCGCAAACAGTACGAGTTGAGCTGTGTTTGGAATCATCACAATAGCTGATATAGAGAATATCAAAATAGATAGAGATTTAGTTCTAATTGTTCCTGTCAGCCAATGGGTTTCCAGTGATTTAGGATCTAATCAGTTTGCTTCTAAGGGTCCAGTGATTTATGAAGATTAAGgctttatactgtattttgtaaaaggCAAAACATTAGAAGGTATGCTTTTGCAAATTAGGACGTGGCTGTTAACTGAAAAAGTCGACACACTAGCCCTTATGATGGAAATAAGGGAGGtttcattatatttgtatttgttcttgctAACTggtaatttatttgtataatatcaCAGCTGACACCAGATGGATCAACAATCTACTGCCAAGGGTGTCATGCCAACATGCATTTTAAGGAACTTGCGATCAGCAAACCTTCATGTTGAGACTAttgtaaaggaaaacaaaaaacgcttTAATCTTATGTTTGTGTACGGTGTTATATAAACTGCCACTGTTTTTCAAAGTTTCACAGTTTGTATCAGGGATAGAAaatcatattgtattttatatcctTTTTGTGTAGCTGTGCATTGTAATTTTGTAgcacatattttgttatttctacaTTTTGATTCATATCGATGTATAGACTTTTCTTGATCTATAGTTATGCTCCAAGCAATTGTGAGATACAGAAGCCCTATAAAAGTGGAATCTATGTCAAATAAGAGGATCGTGTTCAATAGAACTACACATATTCCCCATGACTGGGTGTTACAGGTTGTAGGTCCATTAATCGTCATCATTTATAttctaatttaaaacaatagtcAAATGTATCAATTATAGTAACCTTATACCTTtgatgaagagaaaaataaatgtatttaaaacttaaaaaacaaaaacaaaaaaaggttacCATCAACAACCTGACTTAAAACCACGGACACTGTTAATTTAACAGAATACTTCCAGTCTATGCATGTCACTTTAAAAACtagaaataacacaaatggCTAGTGATGGCTGAAAGAAAGGCTTGGGTACATTACTTCACAatcactatttaaatatttgtgatttCAGCTGAGAATTATATAtgtaatgctttttgtttttgtttttatgttgcagttgtttttttttgcttttttttttaaatatgcatatcatttggtgttatgtatctatttatgttTTGGAGGTTGAATATTatgattaacaacaacaacaacaacaacaacaataatcactTAAAAGGAACAAATAACACACACCCCTAGTTTCAAAACctttctgaaatataaagaTGGAAACTATAATGTTACAAAgtttaataattttgtttttagtatactttttcatgtttcagGAAAGCTTAGGCTTACtctgcttttttaattgcttgcCATTCCACACAGATAGTAACTATTCTGTCTTTTTATAGTTTATACATTATCACattcatcattatcattatgatGATAACAATGTACTTTACTGTAAATTAAAgtacaaacatttaatcaatgCATTCATACACCCATATACATTCATGTGTAAGCTGCTTTTCTAATGTAATATTTAGTATGTTTGAAgctctttttaaattttatttatgaaataaaatgctgattGATCATGACTGAATAAGTGCAGAATGTGTGGTGTatagatgtttttaaaaatatgaatttgggGGGTTATAATGgtatccttttttgttttattgtatgaaaTAAAGAACATCTAGtaatttcaatgtaaatatcTTTTTATTCTAACCTaatagatgtttttattttatttttaccttttttagttttggttttggtttgttttctggtgTTGGCATGAGGTTTTCTTTGaagcattttcatatttcagtgCAAAACAATGGAAGCCAGAAATAATGTTACGTATTTGATTTTACCACCCACATACCTGGTGGTTAACTCTGTGTGGTAGTGCAAAATCTTCACAAAGAATGACATCCacaaatctgttttaatgttttcagttctgtctggttttatttgtttgtcattcacaaataaacaaatgtcttatttttaagaaataattaactGATAAGAATTATTTAAGTGGGAAAGATAAGGTTTTGTGAATTAAAACTAAAAGTCTCCATTGTAAGGTGAGAGAAGAGCACATTACATAATCTGACATTATCTAACATGATCTTTAAAGTAGGCATGATTTTATCAATTGCCTAAATTGACTGAAATGTGTtacagtgtattgtttttttattctgatttGTTGGTTTCTGTTTACTGTGAATGTCCTCcattttttaagtaaaacacattaacttatggtttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43129 lncRNA upstream 36105 23198959 ~ 23203545 (+) False AMCG00019481
TU43120 lncRNA upstream 275652 22963457 ~ 22963998 (+) True G34446
TU43119 lncRNA upstream 310340 22929020 ~ 22929310 (+) True G34445
TU43112 lncRNA upstream 350911 22881180 ~ 22888739 (+) True G34438
TU43109 lncRNA upstream 421190 22818143 ~ 22818460 (+) True G34436
TU43191 lncRNA downstream 406328 23654427 ~ 23654645 (+) True G34509
TU43192 lncRNA downstream 422483 23670582 ~ 23671043 (+) True G34510
TU43246 lncRNA downstream 797590 24045689 ~ 24064965 (+) True AMCG00019492
TU43260 lncRNA downstream 822259 24070358 ~ 24071041 (+) False AMCG00019492
TU43272 lncRNA downstream 897040 24145139 ~ 24145909 (+) True G34581
AMCG00019481 mRNA upstream 35400 23185816 ~ 23204250 (+) True AMCG00019481
AMCG00019477 mRNA upstream 537614 22693692 ~ 22702036 (+) True AMCG00019477
AMCG00019479 mRNA upstream 551373 22670411 ~ 22688277 (+) True AMCG00019479
AMCG00019478 mRNA upstream 582741 22644268 ~ 22656909 (+) True AMCG00019478
AMCG00019475 mRNA upstream 596424 22615905 ~ 22643226 (+) True AMCG00019475
AMCG00019488 mRNA downstream 318482 23566581 ~ 23575527 (+) True AMCG00019488
AMCG00019492 mRNA downstream 812223 24060322 ~ 24086481 (+) False AMCG00019492
AMCG00019494 mRNA downstream 847196 24095295 ~ 24102633 (+) True AMCG00019494
AMCG00019493 mRNA downstream 860863 24108962 ~ 24149017 (+) True AMCG00019493
AMCG00019495 mRNA downstream 905398 24153497 ~ 24178723 (+) True AMCG00019495
TU43058 other upstream 614445 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 2628761 20607474 ~ 20610889 (+) False G34170
TU42783 other upstream 2628761 20607474 ~ 20610889 (+) True G34170
TU42785 other upstream 2628761 20607474 ~ 20610889 (+) False G34170
TU41862 other upstream 7157707 16043942 ~ 16081943 (+) True G33406
TU43194 other downstream 424026 23672125 ~ 23695801 (+) True G34511
TU43819 other downstream 6052856 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 9076301 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 9082538 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 11592217 34840316 ~ 34851323 (+) True AMCG00019641

Expression Profile