RNA id: TU43099


Basic Information

Item Value
RNA id TU43099
length 819
lncRNA type sense_over
GC content 0.48
exon number 4
gene id AMCG00019487
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22670647 ~ 22744182 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGATGCCAAATATGTCAGAACACCCGCAGGGGCAGTATACTTTTAATGAAGAACGTCTTGTGACGTCATGACGTCGGCAGTGTTGCCAAACAGCGGGGCAGCGGCAGAGCCACGTTGGCGAGCCGAGGGCAGCGCAGTCAGCACAGAGCAGCGCCGCGGCCGGAGCACAGCACCCCACACCAAATCAAACATGTCCTCACCTCCGAAAGAGAAAACCGAAACCAAAGCCGGACACCTCCCTGCTGtccACCAAAGCCAACTTTGATCATCTCAGGAGCCGTTGCAAAGGGTGATAAGGACTTCCCTCCTGCTGCGGCCCAGGTGGCCCATCAGAAGCCCCAGCCCTCTGTGGAGAAGCTCCCCGCGTCCCACCACATCAACCAGCATATCCACCAGCCCCGCAAGTGAGCCCGCCATCCCTCCCGACCCAAATAAACACTGTCGCTGTGTTTCAAGTGCAAGGACCACACCAAATGAAATCGTCAAAGCTCAGGATTCCAGAATCAGAATCCCTTCTGAACGCCCTCCAACATTCCACACCGTACCAAAGTGTATGTAGGGTACGATGTTATCCTGTATGTTACAGCACAGAGAATTGTATTTGTGCTGTGAAACTTCGTTTGCACCCTATgggagaacattttaaaatcaagacaGAATCatcaaatgttttagtttttcttccaaTTTCTGAGATTTTTGTAAcctaaaacataattattttacacaaaataacttTTGAAATGATGTCAACTGTTTTTTGTTACTTAACAATGGAATTTTGTGATAGCAATTCAAATAAAGTGtggttgtaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42921 lncRNA downstream 1161421 21546208 ~ 21546524 (-) True G34283
TU42915 lncRNA downstream 1269789 21437915 ~ 21438156 (-) True G34277
TU42753 lncRNA downstream 2158245 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 3226977 19467076 ~ 19480968 (-) True G34006
TU42514 lncRNA downstream 3406398 19294812 ~ 19301547 (-) False AMCG00019417
TU43145 lncRNA upstream 374619 23118801 ~ 23120960 (-) True G34468
TU43155 lncRNA upstream 466059 23210241 ~ 23286999 (-) True G34476
TU43184 lncRNA upstream 832345 23576527 ~ 23578285 (-) True G34502
TU43198 lncRNA upstream 866247 23610429 ~ 23642241 (-) True G34514
TU43225 lncRNA upstream 1154091 23898273 ~ 23947457 (-) True G34541
AMCG00019486 mRNA downstream 64393 22642650 ~ 22643552 (-) True AMCG00019486
AMCG00019476 mRNA downstream 117290 22588533 ~ 22590655 (-) True AMCG00019476
AMCG00019473 mRNA downstream 127741 22567943 ~ 22580204 (-) True AMCG00019473
AMCG00019474 mRNA downstream 491274 22204987 ~ 22216671 (-) True AMCG00019474
AMCG00019461 mRNA downstream 835083 21870015 ~ 21872862 (-) True AMCG00019461
AMCG00019484 mRNA upstream 85965 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019485 mRNA upstream 133103 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019483 mRNA upstream 211596 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019482 mRNA upstream 467881 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019490 mRNA upstream 869945 23614127 ~ 23619816 (-) True AMCG00019490
TU42823 other downstream 1942449 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 3259372 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 6986493 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 7715949 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 8149655 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 403679 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 6773814 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 6801049 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 6894384 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 6935047 29679229 ~ 29685302 (-) True G35101

Expression Profile