RNA id: AMCG00019491


Basic Information

Item Value
RNA id AMCG00019491
length 1707
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00019491
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23620148 ~ 23622993 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAATACACTGGGTAAAGAAGCGTCTGGCACTGCTGCAGTGGGAAAGAGGCCACTActgcaggaaaaagaaaatgacagtgCATCCAAGAGACCAAAGTCAGCTGATGACAATAAAACCAGCAATGACCAGGTCTTCCAGTGCCCCTACTGTAACTACAGTAACAAGGACACCAACCGGATCCAGATGCACGTCATGTCCCAGCACTCGATGCAGCCCGTTATCTGTTGCCCTCTCTGCCAAGACGTCCTCAGCAACAAGATCCATCTTCAGCTTCACCTCACCCACCTTCACAGCGTGGCTCCTGATTGTGTGGAGAAGCTGCTCATGACGgtatCGGCACCAGATGTTATGATGCCCAACATGCTGTTGCCTACGACTACACAAGATAAACTGCAGTGTCCGATTGACACATGTTCAGTTGTTACACCTGAGGTGTCTGGAAATCCTTCAGGTGACAACTCCTATGATGAAAAGAGTACCATAGCACAAGTAAAGAGTGAACAGGATCTTCAGAACGAGGAACTCAAGCCACCAAAGGAAGCTTCAGAGGCACCCGACTGGAAGAAGAGCAGCAGCCAGGACCTGAAAAACCCTGACTCCCTGCAGGAGCACTTGACTGAATTGCAGAAACGGCAGCAGCTGTCTGTCTCTGATCGCCATGTCTACAAATACCGCTGCAACCACTGCAGCCTGGCTTTCAAGACTATGCAGAAGCTTCAAATACATTCCCAATATCATGCTATCCGTGCCGCCACTATGTGCAGCCTGTGCCAGCGCAGCTTCCGTACATTCCTTGCTCTTAAGAAACACTTGGAGAATGGCCATCCCGAGCTGAGTGAGGCCGAGATTCAGCAGCTCTGCGGGAGCTTACCCGTGAACGGGGAGTTCTGCTCTGAAAGTGAAGCCAGGGCTCTCGAAGAGGCACAAGCCCTGGAACAGGAGCTCGACAAAGATGACGACTTGGACCAGGAGGGGAAGGCCAGTCCAGCGGGAAGTGACTGTAGCTCTCTTCCGGATGAGATGGGTTCCGAACCAAAGCGGACTTTGCCTTTCAGGAAAGGCCCGAATTTTACTATGGAAAAGTTTTTAGATCCTTCCCGTCCATACAAATGCACGGTGTGTAAGGAGTCCTTTAcccaaaaaaacattctctTGGTTCATTATAATTCAGTGTCACACTTACACAAACTGAAGAAAGTTCTGCAAGAGGCCTCCAGCCCGGTCCCACAGGAGACCAACAACAGCGTAGATAACAAACCgtacaaatgcaatatttgtaaCGTTGCTTACAGCCAAAGCTCAACCTTGGAGATCCATATGAGATCTGTGCTCCACCAGACAAAAGCCAGAACTGCCAAATTAGAGACTAGCAGTAGTGCTGCAAGTGGAAACAGTAGTGTGGCACCTGCTAATAGCCCAGTTTCTGTCAGTCAAGGACATGTAGAATCTGCAAGCTTACCAGCGTCAgccaacaaagaaaacaatgtagatgccaaagaaattaacaaaaagcaAGCTCCTGATCACATTTCTGTTCAGCCCACTCATCAGCCCTCCCAATCACCAGCACAGCTTCAGATGCAACTGCAGCACGAGCTACAACAGCAGGCTGCTTTCTTTCAGCCCCAGTTTCTAAATCCAGCGTTCTTGCCTCACTTTCCAATGACCCCAGAGGCTTTGCTGCAGTTCCAACAGCCCCAAGTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43184 lncRNA downstream 41863 23576527 ~ 23578285 (-) True G34502
TU43155 lncRNA downstream 333149 23210241 ~ 23286999 (-) True G34476
TU43145 lncRNA downstream 499188 23118801 ~ 23120960 (-) True G34468
TU43099 lncRNA downstream 875966 22707945 ~ 22744182 (-) True AMCG00019487
TU43098 lncRNA downstream 901028 22707945 ~ 22719120 (-) False AMCG00019487
TU43225 lncRNA upstream 275280 23898273 ~ 23947457 (-) True G34541
TU43254 lncRNA upstream 429030 24052023 ~ 24058794 (-) False AMCG00019500
TU43287 lncRNA upstream 523201 24146194 ~ 24146851 (-) True G34596
TU43480 lncRNA upstream 1889091 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 2192700 25815693 ~ 25816056 (-) True G34831
AMCG00019490 mRNA downstream 332 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019482 mRNA downstream 393752 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019483 mRNA downstream 645020 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019485 mRNA downstream 731676 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019484 mRNA downstream 775609 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019489 mRNA upstream 47537 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019501 mRNA upstream 378207 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019500 mRNA upstream 429018 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019502 mRNA upstream 596096 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019510 mRNA upstream 1442553 25065546 ~ 25080710 (-) True AMCG00019510
TU43148 other downstream 420540 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 2854652 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4171575 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 7898696 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 8628152 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5895003 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5922238 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 6015573 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 6056236 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8599071 32222064 ~ 32233398 (-) True G35476

Expression Profile