RNA id: AMCG00019492



Basic Information


Item Value
RNA id AMCG00019492
length 552
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00019492
representative False

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24045689 ~ 24086481 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGACTGGGGTATGAGGCCCTTTTCCCTCTCGTGCTGTCGTGGCTGATGTTTGTGTGGATTAACATTGAGCAGGAGACTATACAATTTAAGGGCACATCTACCAGACTAAAGCTCTCCAATATTGACTTCTCTGAGAACATTGACATATCAAAGATCAGGCAACTGAAGCTAGACGATATACGAAGATCTTACTTTTTTGAGCTGTGCAGCAGTTTTGACTCTTATCATGTCAGCTTGGTTTGTATGGAAGTCCAAAAGCAAAGCACCTCAGCGCTGGAGAGCTTCTCAGCTATGCTGCATCTGACCTTATGTGCCTATGTGCTGAACAATACCCATTCCAGTCTACGTCTAAAGCAGGGCTTGCCTATTTTCAATCAGCTCGTTAGCTGGACAACACTAGGCATTAGGGGGAATGTGGCCAGGAACAAACACCCAAAGATCCAGCTGAAGGACATCatctacaaaacacaaaaacataggAACTTGCTTTATTCAACAGCTGTTACAATggtaagtgtgtgtgtagacaTGATCCCCACTGGCCCCtga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43192 lncRNA upstream 389279 23670582 ~ 23671043 (+) True G34510
TU43191 lncRNA upstream 405677 23654427 ~ 23654645 (+) True G34509
TU43131 lncRNA upstream 773344 23210255 ~ 23286978 (+) True G34457
TU43137 lncRNA upstream 812223 23233270 ~ 23248099 (+) False AMCG00019480
TU43138 lncRNA upstream 812223 23239650 ~ 23248099 (+) False AMCG00019480
TU43272 lncRNA downstream 58658 24145139 ~ 24145909 (+) True G34581
TU43305 lncRNA downstream 129396 24215877 ~ 24219991 (+) True AMCG00019496
TU43312 lncRNA downstream 152935 24239416 ~ 24239813 (+) True G34621
TU43323 lncRNA downstream 240959 24327440 ~ 24328019 (+) True G34632
TU43400 lncRNA downstream 1015908 25102389 ~ 25103872 (+) True G34695
AMCG00019488 mRNA upstream 484795 23566581 ~ 23575527 (+) True AMCG00019488
AMCG00019480 mRNA upstream 812223 23239676 ~ 23248099 (+) True AMCG00019480
AMCG00019481 mRNA upstream 856072 23185816 ~ 23204250 (+) True AMCG00019481
AMCG00019477 mRNA upstream 1358286 22693692 ~ 22702036 (+) True AMCG00019477
AMCG00019479 mRNA upstream 1372045 22670411 ~ 22688277 (+) True AMCG00019479
AMCG00019494 mRNA downstream 8814 24095295 ~ 24102633 (+) True AMCG00019494
AMCG00019493 mRNA downstream 22481 24108962 ~ 24149017 (+) True AMCG00019493
AMCG00019495 mRNA downstream 67016 24153497 ~ 24178723 (+) True AMCG00019495
AMCG00019499 mRNA downstream 93714 24180195 ~ 24182210 (+) True AMCG00019499
AMCG00019498 mRNA downstream 99191 24185672 ~ 24191616 (+) True AMCG00019498
TU43194 other upstream 364521 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 1435117 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 3449433 20607474 ~ 20610889 (+) False G34170
TU42783 other upstream 3449433 20607474 ~ 20610889 (+) True G34170
TU42785 other upstream 3449433 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 5214474 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 8237919 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 8244156 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 10753835 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 11960009 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile