RNA id: AMCG00019500


Basic Information

Item Value
RNA id AMCG00019500
length 4338
RNA type mRNA
GC content 0.39
exon number 25
gene id AMCG00019500
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24052011 ~ 24094664 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGTAGTTGAACAAATCCAACGTTGATGCTAAGTAACTTGCTTCTTAAGTATCGAGTATGATAATATAGTGGTTAAGTTTAGTATTTGTTGTTAAATATAACCAGCTTCTTCACAGGCGACGCGTTATTCTCCTACGAGCATTACATGTGAAATCAGCGCCCAGATCTCATTCATTCATCGGCTCTGGATGTCAACAGGAGTTGAGCAGGATCCTTGGACAGCAGTGCCTTGATGGACATGTTGACGTTCTTCATAGTGGGGCTGGGGGTTCACCTGGTGTTCTTCTCCTCAATATTTGACATCTACTTCACCTCTCCTTTGGTACATGGCATGAGTCCTCAGCAAGTGTCTCTGCCACCTCCAGCCAAACGCCTTGTGTTGTTTGTTGCTGATGGCTTGAGAGCAGACACTTTCTACAAACCAGATTCCAACTTGACAAGTCGGGCACCATACCTCAGGAGTATCATTGAAGAAAATGGCAGCTGGGGTGTCTCCCATACTCGTGTTCCCACTGAATCCCGGCCAGGCCATGTAGCTTTAATTGCTGGGTTTTATGAAGATGTAAGCGCAGTTGCAAAAGGTTGGAAAGAAAATCCTGTAGAATTTGATTCTGTTTTCAATGAAAGCAGATATACATGGAGTTGGGGGAGTCCAGACATACTGCCTATGTTTGCAAAAGGGGCCAGTGGGGATCAtgtctacacacacacttacccTGCAGAGAAAGAGGACTTTGCAGCTAAAGATGCTTCAAAACTGGACACTTGGGTTTTTGATGAAGTCAAGGCTTTCTTCAACTCtgctaaagaaaatgaaacGCTACGGTCAAGATTACATGAGgacagaattgtttttttcttacatttgcTTGGGCTGGATACAAATGGACACGCTCACAGGCCAATGTCAAGGGACTATGTGGACAATGTCAGAATTGTTGATGCTGGTATTGCAGACCTAATTTCTTGGTTTGATGAATTTTATGAAAATGATGGaaaaacagcttttgtttttacttctgATCATGGCATGACTGACTGGGGGTCTCATGGAGCTGGCCACCCCTCAGAGACCCTCACCCCGTTGGTGGCCTGGGGAGCAGGAGTCCAGTCAGCACAGACAGTGACTGCCCAGCACTTTGATGACAATTTTTGTCAAGagTGGAAACTTGAGAACATAAGGAGGTTAGATGTCAGCCAGgCTGATATAGCACCCCTGATGTCCTCTCTAATTGGGGTGCCCATACCTTTGAATTCTGTGGGTATCCTTCCATTGCAGTATTTGAATAACAGCAATCACTTCAAAGCAGAAAGCATGTATGCAAATGCAATTCAGATTCTGGAGCAGTTTAAGGTTAAGATGACCCAAAAAAAGGAGACCACTCTGACATTTCTTTTTACTCCATTTCATTTGCTGACTGACTCAGCACAGGTGGATTTCATGCATGATGCAAATTCACTGATCCAGCAGGAGAGATTTGATGAAGCTATTACTCTATGCAATAACCTAATTGTGCAAGCAATGGAGGGGCTGACCTACTACCACAAGTATGACCGATTCTTCCTGGGATGCAGTGTGGTCTTTGGCTTCGTGGGCTGGACATCCTATGTCATCCTCATGATCTTGAAGACCCACACCGCTCTCAGGAAACCACCGGTGAACAGAGATAAGATATCAAGCACTCCTCTTGCCGGTGCATTTGTCAGCATTGCTCTGCTGATATCATGGTTCTTGCTGGTCCAAAGCAGTCCCTGGACTTATTACATTTACTGCTTGCTTCCAGTGCCTGTGTGGTACTCAGTATTTAAAGAGTTTGGAACTTTTATCAGTCTCATCAATTCAGTTTCTTCATATCCATTAAGTAAGCTCATTGGATTTGTGTTGATATTCATCCTTGGAATAGAGTTATTGGTTGTGAGTTTTTTCTATCGGGCTATGTTAACTCTTGGACTTTTGGTGCTTGCGGGGTGGCCTCTCTTGTCTGAACTTTGGGCACAAGCAAAGatGATGTCCTTCAGCTGGATCTTTGGGTGTTTGTTCCTGGCCACATTCCCCCTAATGCCTGTTGTGGGGAGGGAGCCGAATATGAACCTTGTGTAAGGCTCGCACCACATTTCTTTACAGAACATTCCTTATGTTTTAGTCCAAAAATACATGTGCACTTAGGAGCTTCCCAATCTTTCAATTTTCTGTCAGTAGTTTTAACACAGAAGCTTATAACTTTATAATTTCACCTGCTGTATCACCCATACCAACTGCATGTTTTCTAAGTACCGATAGGTTATAATCATggccccggttccctgaaaaaTTCCAGCCTCCTCTTTTGTTGTGCCTCTGCTGAGTTCTACTCACCTCTTCCAGCGCCTGCTCAGCCTGTTCCTTTCGCTGGTATCAACTTACCTCCTCCTCAGTACAGGGTAACCTCCTTCTGCTAGTAATACCACACTGATGTTCCTTTGCTTATTACTAGGGAATTTCAGATTTATCAAtagattttttataaatatactaaCTTCCTAATGTGTTACATTATTAGATTGATTGTGGCATGTTAAACTGCATACAATGTTTAATCAAGTACTACAGATTGAGTTTGGGAATAGAATGATCTTTTGTTTTCTTCATAGTAACAGCATTCTTTGGCACTGGGAATATAGCTTCTATCAACAGTTTTGATCCTGCTTCAGTGTACTGCTTTCTTACAGTATTTAACCCCTTTGTTATGGGAGCATTGATGATGTGGAAGATTTTAATACCATTTGTGATTGTGATGTGCACATTTGAAACCATTCAAGTGGCGACCCAGCTTTCTTCAAAAAGccTGTTCCTTATTGTGCTTGTCATCTCAGACATTATGGCATTGcacTTCTTTTTCTTGGTTAAAGATTATGGAAGCTGGTTAGATATTGGAACTAGCATCAGCCATTATGTTATTGTGATGTCCATGACGATCTTCCTGATGTTTCTGAGTGTCCTGGCACAAGTGGTGACGTCTAAGAGAATCCATTTgggtagaaaaaataaactgcacttcACATAGTGTGGATATAACTGTGCTGACACAAAAGCTGCAGTTCATTCAAAACAGCAGACATATCTGATAtgtgtacattgttttatatggcATAAGATGCTAATTATGAAACTattgaattatacattatattattccAGGTGGGCTCATGTCTTTCTGgaagtcttttaaaatattattttaaatatcccaATGTCATACTGTCTCTTCTTTACAGTCAAAACTACTCACtttctttacaaatacatttctgtaggACTACATTCACTTGcactatttatttgtgttaaatggTATTTAGAAGGACTGTGGCTAAggattgtatttctttcttcaaaactatttttttctccttcaagCATTATGAATTTTTCTTCACAAATAAGGTGGAGAATTAGGTGAGGATGCCATCTCACATCATAATAAAAGCATGCACTGTCCTGTAAACTGGGCAGGGCAGGAacacaaacacttttaattacatattcattGTGGTAGTTTCTCTCAATCTGTCCATTTCCTTGTTTCTTTaactctctctccatctgcctTTTAACCATCTATCCCATCAGTGTAATAATACAGCAGAACTGATACACCACCTATTTGAGCAGAATTACAAtatgtgtctttcttttttatttattaatgcagtaCTGCAGTGACAGCCCCATACATTCAGTATTATATTGCTATTGACAGGCATTCAAATTGACCGCAGAATATTCCAGCTTTTGTCCTACAGTGGTAGTAAATGTATAACATATCATGTGCTTCTTAAGATAACATTTTAGGTTTTTATgcaagaaattgtatttttgttacataAGATGTTAATGTATTACAATACACACATTCTTCAGTTTATCAATTTTCCAGATAACGGAGGATATTTAAAGTTTGTGTTATACTTTCAACAGACAAGAGGAAGTTATTGTTTTAgttccttttttaatatgattttttcCCATACGAACATAATATATAGACCCAATACAGTGTGGAACTGAAGAGAAGTAATTATAGTCAAGGCAGAAGTATTTTGGGAACATGAAAAGTCACCTGTGAACACAAGAGGCAGCTATCTTaaagggattttgttttcaaatacatcaTTATAAGTGTATTCATTAGTTTTATGATTTGTTACAAACCAAATACAATGTAACATGTTTACTGTTCTAACAATAAGTGGGTGGTCTATGAGTTTTAATTAAAGGTTTGACATGATATTGACTTGCTTTAATTGACAtgtatgaaatgcaaataaaagttGATCACGTGTATTGATTACTG

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
K05285 PIGN; GPI ethanolamine phosphate transferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43225 lncRNA downstream 104554 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 409770 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 473726 23576527 ~ 23578285 (-) True G34502
TU43155 lncRNA downstream 765012 23210241 ~ 23286999 (-) True G34476
TU43145 lncRNA downstream 931051 23118801 ~ 23120960 (-) True G34468
TU43287 lncRNA upstream 51530 24146194 ~ 24146851 (-) True G34596
TU43480 lncRNA upstream 1417420 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 1721029 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 2078398 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 2197691 26292355 ~ 26292934 (-) False G34853
AMCG00019501 mRNA downstream 40957 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019489 mRNA downstream 377326 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019491 mRNA downstream 429018 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019490 mRNA downstream 432195 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019482 mRNA downstream 825615 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019502 mRNA upstream 124425 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019510 mRNA upstream 970882 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019511 mRNA upstream 1003690 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019512 mRNA upstream 1011628 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019509 mRNA upstream 1058193 25152857 ~ 25158446 (-) True AMCG00019509
TU43148 other downstream 852403 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 3286515 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4603438 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 8330559 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 9060015 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5423332 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5450567 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 5543902 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 5584565 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8127400 32222064 ~ 32233398 (-) True G35476

Expression Profile