RNA id: TU43254


Basic Information

Item Value
RNA id TU43254
length 1727
lncRNA type sense_over
GC content 0.34
exon number 6
gene id AMCG00019500
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24052011 ~ 24094664 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTCCTTAACTTTCTCCCAAGGTTTTCTTCATAGTAACAGCATTCTTTGGCACTGGGAATATAGCTTCTATCAACAGTTTTGATCCTGCTTCAGTGTACTGCTTTCTTACAGTATTTAACCCCTTTGTTATGGGAGCATTGATGATGTGGAAGATTTTAATACCATTTGTGATTGTGATGTGCACATTTGAAACCATTCAAGTGGCGACCCAGCTTTCTTCAAAAAGccTGTTCCTTATTGTGCTTGTCATCTCAGACATTATGGCATTGcacTTCTTTTTCTTGGTTAAAGATTATGGAAGCTGGTTAGATATTGGAACTAGCATCAGCCATTATGTTATTGTGATGTCCATGACGATCTTCCTGATGTTTCTGAGTGTCCTGGCACAAGTGGTGACGTCTAAGAGAATCCATTTgggtagaaaaaataaactgcacttcACATAGTGTGGATATAACTGTGCTGACACAAAAGCTGCAGTTCATTCAAAACAGCAGACATATCTGATAtgtgtacattgttttatatggcATAAGATGCTAATTATGAAACTattgaattatacattatattattccAGGTGGGCTCATGTCTTTCTGgaagtcttttaaaatattattttaaatatcccaATGTCATACTGTCTCTTCTTTACAGTCAAAACTACTCACtttctttacaaatacatttctgtaggACTACATTCACTTGcactatttatttgtgttaaatggTATTTAGAAGGACTGTGGCTAAggattgtatttctttcttcaaaactatttttttctccttcaagCATTATGAATTTTTCTTCACAAATAAGGTGGAGAATTAGGTGAGGATGCCATCTCACATCATAATAAAAGCATGCACTGTCCTGTAAACTGGGCAGGGCAGGAacacaaacacttttaattacatattcattGTGGTAGTTTCTCTCAATCTGTCCATTTCCTTGTTTCTTTaactctctctccatctgcctTTTAACCATCTATCCCATCAGTGTAATAATACAGCAGAACTGATACACCACCTATTTGAGCAGAATTACAAtatgtgtctttcttttttatttattaatgcagtaCTGCAGTGACAGCCCCATACATTCAGTATTATATTGCTATTGACAGGCATTCAAATTGACCGCAGAATATTCCAGCTTTTGTCCTACAGTGGTAGTAAATGTATAACATATCATGTGCTTCTTAAGATAACATTTTAGGTTTTTATgcaagaaattgtatttttgttacataAGATGTTAATGTATTACAATACACACATTCTTCAGTTTATCAATTTTCCAGATAACGGAGGATATTTAAAGTTTGTGTTATACTTTCAACAGACAAGAGGAAGTTATTGTTTTAgttccttttttaatatgattttttcCCATACGAACATAATATATAGACCCAATACAGTGTGGAACTGAAGAGAAGTAATTATAGTCAAGGCAGAAGTATTTTGGGAACATGAAAAGTCACCTGTGAACACAAGAGGCAGCTATCTTaaagggattttgttttcaaatacatcaTTATAAGTGTATTCATTAGTTTTATGATTTGTTACAAACCAAATACAATGTAACATGTTTACTGTTCTAACAATAAGTGGGTGGTCTATGAGTTTTAATTAAAGGTTTGACATGATATTGACTTGCTTTAATTGACAtgtatgaaatgcaaataaaagttGATCACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43225 lncRNA downstream 104566 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 409782 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 473738 23576527 ~ 23578285 (-) True G34502
TU43155 lncRNA downstream 765024 23210241 ~ 23286999 (-) True G34476
TU43145 lncRNA downstream 931063 23118801 ~ 23120960 (-) True G34468
TU43287 lncRNA upstream 87400 24146194 ~ 24146851 (-) True G34596
TU43480 lncRNA upstream 1453290 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 1756899 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 2114268 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 2233561 26292355 ~ 26292934 (-) False G34853
AMCG00019501 mRNA downstream 40969 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019489 mRNA downstream 377338 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019491 mRNA downstream 429030 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019490 mRNA downstream 432207 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019482 mRNA downstream 825627 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019502 mRNA upstream 160295 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019510 mRNA upstream 1006752 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019511 mRNA upstream 1039560 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019512 mRNA upstream 1047498 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019509 mRNA upstream 1094063 25152857 ~ 25158446 (-) True AMCG00019509
TU43148 other downstream 852415 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 3286527 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4603450 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 8330571 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 9060027 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5459202 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5486437 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 5579772 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 5620435 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8163270 32222064 ~ 32233398 (-) True G35476

Expression Profile