RNA id: AMCG00019502


Basic Information

Item Value
RNA id AMCG00019502
length 1369
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00019502
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24219089 ~ 24466531 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGAAGCTCCTTCCCGGTTCCAATGCGGGTATGGTAGGAGGCAACAAAGTCCTGCAAGTGGCCAGGACGCTGTCGCACATGTTGTGGCCGGGCCACAGGCACAGCTGGTGTGGGGCCCCTGCCATCTGCCACGTGGTTGTGGGGAAGATGTTCAATCTTGCCCAAATTACATCTGCCAGGAGTGCTGAGGAGATGTCATACGACCATCATTTGACCAATTTGATGATGGCAgcTAATTTTGTTAGGTACATGGTTTTGCAGACCCATGTCTTGgatggTCAAGTTCTTCCCCTGCAGGGCAGTAATGTTGTGTTGGAAGAGATTCAGAGTAGGATTCTGCGCTTCCTGCAGCAGGCTACCACTTGGGCGTCAGATAAACGCTGTGCTGGGGTAAGCTTTCGAATCCTGTCCAGCTCACTGCTTGGCCTGCCAGATCTCGCAGTGCTGCAGATAATCAACCATAGCGGAACACAGAAGTTCTGTTTGCTGATCCTTAATCAGCCTCTAGATGAAGACTACTTTCATCAGCTTTGGAGGAAAGATCCCCGGGCACTGTCATCTTTCAGAGAGGGATCCTTCTGTCAAAGTCCTCGTGTCATGTTGCCCATCAGCAGCTCTCTGAAGTCCAAGAACTGCACTGGACTGTTGGCCAACAATGAGTCGGAAGATAACAGTTTTCTGCCTGACTACATCAGTGGGGATTTCGATTCCATTAAACCAGAAGTCAAAGAGTTCTACAATAACAAgaAATGCAAGCTCATAGAAACTGAAGATCAGGACCTAACAGACTTCACCAAGTGCCTCAGCATCCTAGTGGAAGAAATAAAGAAGCAGCGTTTACAGGTGGATACCATAGTGATACTGGGTGGGCTGGCGGGGCGCTTTGATCAAACAATGGCTACTGTGGAGACCCTCTTCCATGCCCTCAACATGACAGACCTGCCTATCATTGTAATTCAGGGATTTTCACTGGCATATCTGCTCAGACCGTGTAAGCAGCACAGTCTGAATGTGAATACGGGTCTGGAGGGAGACTGGTGCAGCCTGATTCCGGTGGGGGGTCCGTGCAACACAATCACCACCGGCTTGAAATGGAACCTCAGTAAGTGGGACTCCTTTATATCACCCAGAAACAATTACCTTAAATCATTCAAAACTGTTCTTTTGTGTATtggaaaacagaagaaagaaatgGTATCTAGGGGAAAAACACTGTGTAAGATTGGTCAAGATAATCAGTTGCTTCAATTTGGAAAACTGGTCAGCACCTCCAATACATACGAGTCCCACGACCCCCAAGAGGGGAGAAAGCTGGTGACTGTGAGGACGGACCAGCCGCTGCTCTGGAGCATGGGCATTCGCAAGAAA

Function

GO: NA

KEGG:

id description
K00949 thiN, TPK1, THI80; thiamine pyrophosphokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43287 lncRNA downstream 72238 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 160295 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 271632 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 576848 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 640804 23576527 ~ 23578285 (-) True G34502
TU43480 lncRNA upstream 1045553 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 1349162 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 1706531 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 1825824 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 1825824 26292355 ~ 26336737 (-) True G34853
AMCG00019500 mRNA downstream 124425 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019501 mRNA downstream 208035 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019489 mRNA downstream 544404 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019491 mRNA downstream 596096 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019490 mRNA downstream 599273 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019510 mRNA upstream 599015 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019511 mRNA upstream 631823 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019512 mRNA upstream 639761 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019509 mRNA upstream 686326 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019521 mRNA upstream 1052496 25519027 ~ 25522993 (-) True AMCG00019521
TU43148 other downstream 1019481 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 3453593 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4770516 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 8497637 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 9227093 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5051465 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5078700 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 5172035 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 5212698 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 7755533 32222064 ~ 32233398 (-) True G35476

Expression Profile