RNA id: AMCG00019504


Basic Information

Item Value
RNA id AMCG00019504
length 420
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00019504
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24949451 ~ 24952124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGCGGTTTCTTTGAAGCTGGAACCATGATCAAGTATAACTTCCTACCTGAGGCGACGGTGGCAGCAGCGGCAACTGCCAAGGACGTGAAGAGCGTTCCCCAGATCAGGCCCACTGAAGTCAACCTGACCAGCGAGGACCTAGCCTTCAGCTTCAGCACCACCAACACCCCCAGCATCCTGGTGTACATCAGCTCCAGGACACAGGACTACCTGGCTGTGGTGCTTAGGAACAACGGAACTCTACAAATCCGGTACAACCTGGGGGGCTTGAAGGAGCCCTTCAAAATTGATGTGGACCACAGGAACATGGCAAACGGACAACCCCACAGTGTGAATATCTCAAGGGATGAGAAGGCTATACAACTGCAGGTAAATCCCAAAGGGAAATACTCCAACAGCATCAATGACTCTGCCTAA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0030001 metal ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43323 lncRNA upstream 621432 24327440 ~ 24328019 (+) True G34632
TU43312 lncRNA upstream 709638 24239416 ~ 24239813 (+) True G34621
TU43305 lncRNA upstream 729460 24215877 ~ 24219991 (+) True AMCG00019496
TU43272 lncRNA upstream 803542 24145139 ~ 24145909 (+) True G34581
TU43260 lncRNA upstream 878410 24070358 ~ 24071041 (+) False AMCG00019492
TU43400 lncRNA downstream 150265 25102389 ~ 25103872 (+) True G34695
TU43411 lncRNA downstream 169046 25121170 ~ 25121378 (+) True G34704
TU43456 lncRNA downstream 390137 25342261 ~ 25347728 (+) True G34742
TU43562 lncRNA downstream 1299300 26251424 ~ 26326302 (+) False G34834
TU43563 lncRNA downstream 1340231 26292355 ~ 26344732 (+) True G34834
AMCG00019505 mRNA upstream 68895 24810551 ~ 24880556 (+) True AMCG00019505
AMCG00019503 mRNA upstream 190147 24746477 ~ 24759304 (+) True AMCG00019503
AMCG00019496 mRNA upstream 731656 24217258 ~ 24217795 (+) False AMCG00019496
AMCG00019497 mRNA upstream 734084 24208567 ~ 24215367 (+) True AMCG00019497
AMCG00019498 mRNA upstream 757835 24185672 ~ 24191616 (+) True AMCG00019498
AMCG00019506 mRNA downstream 32304 24984428 ~ 24990342 (+) True AMCG00019506
AMCG00019507 mRNA downstream 76470 25028594 ~ 25063574 (+) True AMCG00019507
AMCG00019508 mRNA downstream 217544 25169668 ~ 25213712 (+) True AMCG00019508
AMCG00019514 mRNA downstream 300055 25252179 ~ 25299619 (+) True AMCG00019514
AMCG00019513 mRNA downstream 358635 25310759 ~ 25343687 (+) True AMCG00019513
TU43194 other upstream 1253650 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 2324246 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 4338562 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 4348831 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 7372276 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 7378513 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 9888192 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 11094366 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile