RNA id: AMCG00019505


Basic Information

Item Value
RNA id AMCG00019505
length 583
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00019505
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24810551 ~ 24880556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCATGCCAAATCACTGCGAACACGGGGGCAGATGTACACAGACATGGGACAGCTTCCGGTGCACTTGTGATGGGACTGGCTATACTGGGGCTACCTGCCATACCTccATCTATGAACAGTCTTGTGAAGCCTATAAGCATCTGGGAAGGACATCAGACACATACTGGATAGATCCGGATGGCAGTGGACCTCTCGGGCCCTTTAAAGTGTATTGCAACATGACAGAGGACAAGGTGTGGACCACAGTGAGCCATGACTTGCAGTCCCAGAAGTCGGTGAGCGGCTCCAGCCAGGACAAGAGGACAGTCCTGCAGTTGAGCTACAGTGCCTCCATGGAGCAGACCTCTGCCATCACCAGCAGTGCTGAGAACTGCGAGCAACAAGTCTCCTACTCCTGCCGCATGTCCCGGCTGCTCAACACACCAGATGGTGTCCCATATTCGTGGTGGGTTGGGAAGGgcaatgaaaagcatttttactgGGGAGGGTCCAGCCCTGGAATCCAGAAGTGCGCCTGCGGTATTGAGAGGAACTGCACAGACCCCAAGTACTACTGCAACTGCGATGCGGACCAGAAACAG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43323 lncRNA upstream 482532 24327440 ~ 24328019 (+) True G34632
TU43312 lncRNA upstream 570738 24239416 ~ 24239813 (+) True G34621
TU43305 lncRNA upstream 590560 24215877 ~ 24219991 (+) True AMCG00019496
TU43272 lncRNA upstream 664642 24145139 ~ 24145909 (+) True G34581
TU43260 lncRNA upstream 739510 24070358 ~ 24071041 (+) False AMCG00019492
TU43400 lncRNA downstream 221833 25102389 ~ 25103872 (+) True G34695
TU43411 lncRNA downstream 240614 25121170 ~ 25121378 (+) True G34704
TU43456 lncRNA downstream 461705 25342261 ~ 25347728 (+) True G34742
TU43562 lncRNA downstream 1370868 26251424 ~ 26326302 (+) False G34834
TU43563 lncRNA downstream 1411799 26292355 ~ 26344732 (+) True G34834
AMCG00019503 mRNA upstream 51247 24746477 ~ 24759304 (+) True AMCG00019503
AMCG00019496 mRNA upstream 592756 24217258 ~ 24217795 (+) False AMCG00019496
AMCG00019497 mRNA upstream 595184 24208567 ~ 24215367 (+) True AMCG00019497
AMCG00019498 mRNA upstream 618935 24185672 ~ 24191616 (+) True AMCG00019498
AMCG00019499 mRNA upstream 628341 24180195 ~ 24182210 (+) True AMCG00019499
AMCG00019504 mRNA downstream 68895 24949451 ~ 24952124 (+) True AMCG00019504
AMCG00019506 mRNA downstream 103872 24984428 ~ 24990342 (+) True AMCG00019506
AMCG00019507 mRNA downstream 148038 25028594 ~ 25063574 (+) True AMCG00019507
AMCG00019508 mRNA downstream 289112 25169668 ~ 25213712 (+) True AMCG00019508
AMCG00019514 mRNA downstream 371623 25252179 ~ 25299619 (+) True AMCG00019514
TU43194 other upstream 1114750 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 2185346 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 4199662 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 4420399 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 7443844 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 7450081 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 9959760 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 11165934 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02537614_02606018.mRNA True 3661 mRNA 0.46 23 CI01000018 2537510 ~ 2606161 (-)