RNA id: AMCG00019509


Basic Information

Item Value
RNA id AMCG00019509
length 1562
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00019509
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25152857 ~ 25158446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCAGGACTCATCTTGTGGACGTGCGGTCGTTACAAAATGTAACACCGGCAGAGGCGCCACTTCTTAAACTGTCTCTCCGTGaaagtgttgtgttttattacagaaaatttGTTTTTACGTTTGTGTaattgacataaaataaaataaaaatgaagttcCGAGCTAAGATGGTGGATGTCAGCTGCCTCAATCATTTTACATGTGTGGTGAATACAATCTCCAAACTAACCAAGACCTGTATGCTGCGGCTGACGGCCGGTCACCTCTATTTCATGCTCTCTGACAAAGTCGCCAATGGGGGCGTGGGCATGTGGTGCGAGTTATCTCAGGGCAACTTTTTTGACGAGTTTCAGCTGGAAGGTGTTTCGGCAGAAGCCAACGAGATCTATCTGGAACTCGTCCCCGAGAATCTCTTCAGGGCGTTGAAAACGGCATATAATGCTCGGTCTCTTAAAATCAAACTGACGAAAAAGCACTGTCCTTGTATCACTGTGGCAGTGGAGCTGCCTTCCTTGTCCAGTGTGAATCGCATCGTCACGCATGACATTCCAGTGCAAGTCATACCCCGCAGACTCTGGCAAGACTTCAAGGAACCGAGTGTGCCAGATTTCGATGTTAGTATTTATCTGCCTTCTCTGAAGATAATGAAGAATGTTGTGGATAGAATGAAGAATCTCTCCAACTTTCTTGTGCTGGAAGCGAATCAGAATGGTGAAATGAATCTGAAGATAGAAACTGACCTGGTGTCCGTCACCACGCATTTTAAAGGCCTGGGGAATCCTCCCTGGGGTGACGAGAATTCCCAAGGGCCCGGTCGGGACAGAAACCCGGAGACCATGGCTGAGGCCCGGGTGGACATCAGGAAACTTCAACAGTTTCTAGCTGGACAGCAAGTCAATCCCACCAAAGCCATGTGCAACATCGTTAGCAACAGAATTGTACACTTCATTTTGCTACATGAGGATGTGTCTCTGCAGTACTTCATACCCACAGTGGCATAAGAAAATATGTTCCCGACAGAATGCTTTGAAGacttgtatttatatgtaaaaagGCCATGATTGAGATATTaggtgatgttttatttaatagttgatgtatatatgtatatttttaaatgagactACTGTGTTAAATCAACATATAATTGTACTGCAATACCAATCATCTTACACTTCTGTACACCTGGTGAAGTTTGATTGCTGAAGCTTATATCTGCACTATAACAATCCAGGCCATCTGTATTAAACCAATTCATATCCATTCTGTTTTCTTGGATTAGAGTTTggtgtatataaaaaaagtaattgaaaacagtttttcttAGGTTACTTTCTTACAACTGTAAATAATCCACCCTACATAAAAGATGATCTAGTTCATATTCTTAAGTATTGTGAATTAAATGCAGAAAGTCTGTTTTGATGACAAATTtgcaacaaagaaaatgcatatgAGTGGAAGCAGAtggaaatgtgttaatgcaAATCTTTTTGTTCACTTCATGTAATTCATGGTAAAATTTgtcttttgtaaataaaaaaatatattttccttgaA

Function

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0030896 checkpoint clamp complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K10903 HUS1; HUS1 checkpoint protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43287 lncRNA downstream 1006006 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 1094063 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 1205400 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 1510616 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 1574572 23576527 ~ 23578285 (-) True G34502
TU43480 lncRNA upstream 353638 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 657247 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 1014616 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 1133909 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 1133909 26292355 ~ 26336737 (-) True G34853
AMCG00019512 mRNA downstream 13540 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019511 mRNA downstream 50284 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019510 mRNA downstream 72147 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019502 mRNA downstream 686326 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019500 mRNA downstream 1058193 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019521 mRNA upstream 360581 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019524 mRNA upstream 446456 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019525 mRNA upstream 473251 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019527 mRNA upstream 2194771 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019536 mRNA upstream 3501571 28660017 ~ 28711602 (-) True AMCG00019536
TU43148 other downstream 1953249 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 4387361 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 5704284 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 9431405 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 10160861 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 4359550 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 4386785 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 4480120 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 4520783 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 7063618 32222064 ~ 32233398 (-) True G35476

Expression Profile