RNA id: AMCG00019511


Basic Information

Item Value
RNA id AMCG00019511
length 1848
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00019511
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25098354 ~ 25102573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtCTTGGAAGAGGTAGAGGAAGgtgggcaggaggaggaggaggaggaggatgaaggtgatgaagatgaagaggaggatgaTACAGAGGTTAAAGAAGAGAATGGAGTGGTGGTTTTGAAAGACTCCAATTTTGATTCCTATATCGCAGATAAGGACACTGTACTGGTGGAGTTCTATGCGCCCTGGTGTGGTCATTGCAAGCAGTTTGCTCCAGAATATGAAAAAATAGCAAAAACCTTGAAAGAAAATGACCCACCGATCCCAGTGGCCAAGGTTGATGCTGCGAAAGAGACTGGCCTCGGTACCAGGTTTGAGGTCAGTGGATATCCCACCATCAAAATCCTGAAGAAGGGACAGCCAGTGGACTATGATGGTGAACGAACAGAACAAGCCATTGTAGCACAAGTGAAGGAAATTGCCAGCCCAGACTGGGCCCCCCCACCAGAAGCTACAATGGTCTTGACCAAGGATAATTTTGATGACGTGGTCAATGAAGCCGACATCATACTGGTGGAGTTCTATGCACCGTGGTGTGGCCATTGCAAGCGTCTTGCTCCAGAGTATGAAAAGGCAGCCAAGGAGCTCAGCAAGCGcaccccccccatccctctAGCCAAGGTCGATGCCACTGTGGAAAGTGAAATTGCATCCAGGTTTGAAGTGTCTGGGTACCCAACCCTCAAGATCTTCCGAAAGGGAAAGGGCTTCGAATACAACGGACCGAGGGAGAAATACGGGATTGTTGATTACATGAGTGAACAGGCTGGTCCCCCATCAAAGCAGGTCCAGACACTCAAGCAAGTACAGGAATTCATCAAAGAGGGAGATGATGTTGTCGTTGTTGGTGTCTTCACCAGTGATCAGGATGCTGCCTATGAAATCTATCAAGAAGCTTGTAACAACCTGAGAGAGGACTTCAAGTTCCACCACACCTTCAGTAACGAGATTTCAAAGTTTCTCAAAGCTTCTCCTGGTCAGGTCATCATGATGCAGCCTGAGAAATACCATTCTAAATATGAAACTAAAATGAGCCCACTTGTCTTGCTGCAGGATTCCACCACTGCAGCTGAAGTAAGAGAGTTCTTCACTAAGAACGCCCTTCCATTGGTCGGACACCGAAAACAAAGTAATGATGCCAAACGATACACCAAGCGACCCATGGTTGTGGTCTACTATGGTGTGGACTTCAGTTTTGACTACAGAGTAGCTACTCAGTTCTGGAGAAATAAAGTCTTGGAGGTGGCAAAGGATTTCCCAGAGTACACGTTTGCCATTGCCGATGAAGAGGACTATGCCGAGGAGTTGAAGGGGCTGGGGCTGTCGGAGAGCGGAGAGGAAGTAAATGTTGGGATTCTGGCAGATGGAGGCAAGAAGTACGCCATGGAGCCCGAGGAGTTCGACTCGGACGTGCTGAGGGAGTTTGTCATGGCTTTTAAGAAAGGTAAAGTAAAGCCCATCATCAAATCTCAGCCTGTCCCCAAAAATAACAAAGGCGCCGTCAAGGTTGTAGTCGGCAAAACCTTCGAGGAAATCGTCCTGGACACCAAGAAAGATGTCCTTATTGAGTTCTATGCCCCGTGGTGTGGGCACTGCAAGAAGCTGGAACCAGATTACCTGGAGCTTGGAAAGAGGTACAAGCATGAGAAGAACCTTGTCATTGCCAAGATGGACGCCACTGCTAACGATGTTCCTCACGACAGCTACAAAGTGGAGGGATTCCCCACGATTTACTTTGCTCCCAGCAACAGCAAGCAGAAACCCATCAAATTCGAGGGTGGAAACAGAGACTTGGAGGCCTTTAGCAAATTCGTTAAAGAACATGCCACAAAACTATCACAAAAGGATGAA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0006457 protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
K09582 PDIA4, ERP72; protein disulfide-isomerase A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43287 lncRNA downstream 951503 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 1039560 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 1150897 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 1456113 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 1520069 23576527 ~ 23578285 (-) True G34502
TU43480 lncRNA upstream 409511 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 713120 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 1070489 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 1189782 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 1189782 26292355 ~ 26336737 (-) True G34853
AMCG00019510 mRNA downstream 17644 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019502 mRNA downstream 631823 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019500 mRNA downstream 1003690 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019501 mRNA downstream 1087300 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019489 mRNA downstream 1423669 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019512 mRNA upstream 3719 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019509 mRNA upstream 50284 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019521 mRNA upstream 416454 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019524 mRNA upstream 502329 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019525 mRNA upstream 529124 25631697 ~ 25639027 (-) True AMCG00019525
TU43148 other downstream 1898746 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 4332858 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 5649781 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 9376902 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 10106358 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 4415423 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 4442658 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 4535993 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 4576656 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 7119491 32222064 ~ 32233398 (-) True G35476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02338151_02342822.mRNA True 2305 mRNA 0.45 11 CI01000018 2338151 ~ 2342889 (+)