RNA id: AMCG00019512


Basic Information

Item Value
RNA id AMCG00019512
length 7322
RNA type mRNA
GC content 0.49
exon number 44
gene id AMCG00019512
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25106292 ~ 25139317 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agggAACCTTCTTCATTACAGTTACAACCTATAATGAGTTCTTCAATGCTACTAAAGAGCTTGGCCCATATTATGTGGAAATAATGCCTGAAAACTTAACATTGACTATGGATTCGAGTGTGGTCAATAAGAATGAAGTCATTGTATTCAAAGCACTCTTAATAAGGGGGACTAATGTGACGTACACTTGGAACATGGGAGATCAGACAACCTATGTAGACAAAGGTCCCAAAGTATCTCACAGGTTTCTGACAGCAGCGACCTACAGCGTGTCTGTGAGCGTCCAGAACAGGGTGGGCAGTGTGTCAGCCAGCACAAGCGTCTCAGTGCTTCACAGGATGCAGCctgTTTTTATCCACACAGATGAAACTGTTTTTGCCACTAACACTAATATAACATTCATCGCCATGACAGCAGAGCCAGACCCGCTTGAGTTCCTATTCAGCTCATTCACTTCTGACATCTATCCCATTACAATCCAGAGAAAAGTGCAGCCCAACAGGCTTCTGTCAAATGCCTCTGTACTCTTAAATGCCAACGTAACCTTTCAATGCTGGATCAATGCTGGAACCAATGTCACCTACCAGTGGGATTTTGGAGATGGCAACAAAAGAATAGGAGAGAGCTCTGAATCCCATGTATTTAGCAGGTTGGGCGAGTTCACAGTTGAGGTGACTGTGTTTAATCTGGTCAGCTCTGTTTCCCTGACTAGACAGATCTTTGTTGTTCATGAGCCATGCCAACCTCCTCCAGTCAAAAACATGGGTCCCTTAAAAATACAGGTCAGGCGCTACCAAACTCTTCACCTAGGGGTGACTTTTGAAGCTGATATTCAATGCAACATTTCACAGGGGCTATTGTACCAGTGGGTCTTTTATGACTCCAATGGCTTTCAAGCCCAGCTTCCTCAAATAGAGGTCAATCAGCAGGCTATTGAGCTCCCAAACAATCTTCTGCATTATGGAACCTATACTGCCATAGCCAGAGTCCAGATCAAAGGCAGTGTGGTCTACAGTAATTATACAGTACGCATCCAGGTGGTGCCAACACCACCAGTCGCTGTGATCAGTGGGGGTAGCAATATTTTCATCAGTAACAGGAATGGGTCCTTTCTAACTCTGAATGGACAGGGATCGTACGACCTTGACTTCCCTGGCAATCCCATGAGGTTCAAGTGGGATTGTAAGCCTCTTAGCAGGATTGAAACTTCATGCTTTGATGTCTCTATTCCTACCTCTATTCCTGTTGTCGTGCTTCCAGCTAGTATTCTTAAAGACAGATTTGATCAATTCAAATTTACGCTCACAGTACAGAGTAGAGATCGTTCTTCCACATCTGAGATGTTTGTCACCATCGAACAGAACCTACCAAGAAAAATACTAGTGTTTTGCTACCATTGCCGAGGGAACACAGCTAATTGGAATGAACAATTCTCTGTCCGGGCTCTTTGTGAAAACTTTAGTGACATAGAAAACATCACATTTACGTGGAATTTGTATCTGGTAAATGCATCTAGTAAAGTAGTATTTGAAGTTCCTTTTTGCAAATCTCTTGACGTCAGTGTCCCGGCACGCATTCTTGCTTACCCTGTGAATGGAATACCCCCCTCTACAGCTCAGACCCCCCGGGCCTCCTCTAATACATGGCATCCCTCCGCTCCCACATCTTCCAGCCCTATTGCTCCCTCAAAAGCTTCCTCCCCAGTACCTGTTGCCTCTTCAACACACATCACATCTCCAGTTACTAATACTACAACAACAGTAACATCTGCTGCTCATTCATATACATCTGTTCTTCCCCACGTTCCCAGGCATTCGCAAAACACCACAGGCAAGAAGTCAGACATCATTTCCAGGAATATATCATTCACAGGCACTACAGTTCCTCCATCAACCGTAGAATATGCCTTCCCAGTGCCGACCACCCCCTTTCCCTCTGAATTTCCACTCTTCCCCTTGCCTTTCCCTGAGGAGAGCCCTCACTCAGGAGGTAGGCCTCGTCGGTCACCCGAAGCTCCTGAACAGATGTCAACCATCGCCACTCCTCCTAACATCACACCAGATTTCACTACTGTTGCTTCTGACTTCAGTATTAAAGAGGGTGACATCTCTGGGGAGTTTCCTCCCATCTTTGAAGGTGACAGTGCTGGTAGGCGACCAGgACTGAGGGATGGGAGCTATACAGGAGGAGACACTGAGGATACTGAAGCAGATGATAAGGAAGGATATAATATAGTGGGTCCCGGCCCCCAGGCTGCACCTCTCACTACCAAGACCCTGCTGGACCTGGACAGAAGGCTGATTGACAGCGCTGTTTTCCAGTCTTATACCTTGGCagGTATATCCTCAGATATCATATCTTTTATGCCTTTCACACTGAAAGCTAACAATCTTTACATGCTGGAGGTTTCTGCAAGTTCACAGCACAATCTTTGGGGTAAAACTCAGTTCTTCTTCTCCACCAATGAGGTTCCCCAGGGTATGACCTGCCAGGTCCAGCCCAGTAAGGGATATGAAATTCGCACAGACTTCAGTGTCTTCTGTACATCAGGGAAAGAGGACCTCCTGTATGTGTATAGCTTCAGCACTGCCAATTCTTCAAGGAAGACTCTGTACAGAGGGCGAGATTTTCAATATTTCTTCAACCTCCCTTCTGGAGAACCAGCAGATAACTATAAAGTTACCATTTACATTGAGATACACAACAGATTCGGGTCTGCAACACAGCCATGCCCTGTGAATGTGACGGTCCTGCCCAGCTTCTTGAGAAGCAACTCCTCTGCCTACAGTCCTGAGCAGGAGCTTTATGTGGATGGCTTGAGAAACCTTACAACCCTCATGCACATGGGGAACAGCGTCACGACTCGAAACTATGTGACTCTGCTGACCAGTGTACTAAACCGGCTGGCCCTGGATCCTGCGGCCTCGAAGGAGCTGCAGACGCAGACGAGGAGTGCCTTGATCTCTGCAGTCTGTGAGCTCTCTGTGAATAAGCGGGCATTGATGCTGGATAATATCAGCATGCTCAAAGCCCTCATGAGGGTCACCAGTCAATTCAGCAGgcttacaaaactaaaattaacaATACCTGACACCGCAGCCATCTACGTCTTGGATGAGTGGACAGTGAGCAGCCTGCTGTCACTGCTCTCCAATGCTCTGGAAGCCCGTCTCCCTGCCTCAGAGGAGGGCATCCAGCTGACATTGCAGGGGATCCGGGCCTCCTCAGACCTGCTGCTGAGTTATGTGCTGATGAATAATGTCACAGAGTACAGTGTGAGCACCAGCCTGATGGCGCTGAAGATTAGTCGGCAGTGCAGATTTCAGGGCGCAGTGAGCAGCTCCGGCTCCACCACCTTCTACCTCCCACCGACGCTAGGGCAGCACAGCAgcagacacagcagcagcagcagcacagacaggACGTGCTTCATCTCTCGGCTGATGTTCTTCAGACGAGACCCTTACTTCTGGGCCACAGCGCCAGTGAAGatCAATGGTGACATTGCAGACCTGACTTTGTTTAACTGTACCACCAAGAAAGAGATCAAAGCACATGCACTGTCCACACCAGTCACCGTTGAGTTTGACAAGAGATGGGGAAATGAAAGTGGCTCCCCACAGTTCTATCTGCTACGAAATGAAATTAATATCCACCAGTTCAGCATCAAGCCAGAAAACCTACAGGAAGCACTGCAGATTTCAGTGGATTTTATCAGGCCTGACAACCACACATTTCCAATAATGCTTTTGTTCAGAATGTTTGAGAAACCAACTCCCAGCTCATACAATGTGAAGAAGATTCATCGCTGGGAGGGAAatacagttcacattttcatgtCTTCTTCTTCATTGAAAGatCCAGGAAATTATTACTTGGCTCTCCTCAATGCCAATTACAACAGAGCGCCTAGCAATAAGTACATCACACATGCTGTGAACTACACCTTGAGGATTGAGGGGACGCGGTGTCTGTACTGGGATGGCATTAAAGACTGGAAGTCCGATGGCTGTGTTCCCCTTCAGGGCTTGTCTTCTAGTAAAGTGAACTGCAGTGCCTTTGACAACCTCGTCCTGTGCAGTGTGATCCTTATCTCCCTGGGAGCCTGCAGTCTTCTGGCTGTTGTCTGCAAGCGAGCGGACATGGCCAATGAGAAGAAGGGTAGCTTAGTCCTCCTGCAGGACAACAGCCCATCTGACCAGCAGATGTACACAGTCACGATCGACACAGGCTTCCGGTCCAGATCCATCATGACGGCCAAGGTTCACATTGTCTTGTATGGTGAGGAAGGGGTTTCAGAAACGAGAGAATTGAACTGCTCTGAGAAAGTGCTGTTTGAGAGAAACTCGAGACACACGTTCATCTTGAGCTCTTTTGACAGCCTGGGTCCTATATGGAAGGTCCACCTTTGGCACAACAATGCCGGCCACTCGCCCAGCTGGTATGTCAGCCATGTGATTGTCAAGGACCTGGGCACTGGCACCAGCTGGTTCTTCCCGGCTGAGTGCTGGCTGGCTGTGGATGAGGGTGATGGGAAGGTGGAGAGGGAGCTGACATCTCTCACTCAAGGCCCTGGATTTAAAAAGTTGCTGTACATCAAGCTGACCGAGTATCTGGAGGATTTTCACTCGTGGGCCTCTGTGTACAGCCGCCCCTCTCACAGCCGCTTCACACACACCCAGCGCCTCACGCTGTGCCTCCTCCTGCTGTCGGGCTACATGCTCCTCAACACGCTGCTCATTCACTTCAGGGATGACCAGTACACAGCTGAATTTGGTCTCATTGATGTCTCGGCTGTCTCCCTGGCAAATGGATTCCTCAGCACTCTGGCTGTGCTTCCAGTGGGGGCTCTGCTTTCCCTGCTCTTCCGCTTCAGTCAGAGGGGCCTGGTGGAAGGGCACTCTCCCAGccttgtttcagtgctgtatggaGGTCCGAACAATAAGAACCCAGGGCAGTGCGGCTCTGATTTCAGCTCCAGTGGCTTTGAGGATTGCAGCTTGCAAGACGGCAAACTCCAAGCCAAAGACTTCAAGCACAGCCACAGTGATCTCCAATCCAGCTTCTCCTCAGagCAAGGTTGTGTATTTGAAAAGCAAGCTTCTGGAGGCAGTAAAGTTGTGCTGCCTTCCTGGTGTCGCTATGTTGCGTGGACACTCTGTTTGTCACTGTCTGTCACCTGCATTGTACTCAGTGCAATCCTGGGAATTTTAGCTGCCCGTCAGAGAGCTCGTTACCTGCGCCTGGCTCGACCGCCCACTTCTGCACAACTGCGGCAGGTTAGAGACAGGGTGAGGAAGGAGACTCTGAAACAAAAGACCCTCAGAGAGCTTGTGCTTTATATCACCATGTTGTTCCTGCTCTTGTTCGTGACTTACGGGAAATTCTCAAGCAATCATTATCACCTGAATCAGGCTGTCAGAAAGGAATTCACCCGGAGCCCAAATAACCCATTTTCAGGGGTTAAAACCTATGAGGACTGGTGGAACTGGAGTTTAACCACTTTGCTGGATGGTTTGTACTGGGATACATGGTACAATCGTGCTTCAGCTGAGAGCAAGATCCACAGCTTGTTTGCAGACCTAGTGCCAGATTGTTTACCTACCTATAGTCCAGTTGACCGAGGCCCAGGCCAATCTGAAGGGACGGCCAGTCTGGCCCTCGGAGACGGGCCTCAGCACTGTGGGCGGATTGCGTGCTACACCGGCCAAGGAACGCGTGTCAATTTGGGCAGAGCGAGGTCTTCTGCTTCGGTCAAGCTGCAGGAGTTGAAGGCCAGTGGCTGGCTGGACAGAGACACCAGGGCAGTCATGGTAGAGTTCACCCTGTACAACCCACCCAGCAACCTCTTCACCAGTGTCTCCCTGCTGGCCGAGATGCCCATCACTGGGGGCCTTCTGCCCTCTGTGTCCATCGAGTCAGTCAGAGTCTACCACATCTTGTGTGTCCTTGACTACTGTATCATGGGCTTTGAGGTCAGCATCATTGTCATCAGTCTCCTTTactacatttattatttgtatggatTCATTCTGACTGTGGAAGTTATTGACCGCCTTCAGAGGGACAACTTCAAGGCTTTTGTGGATCTCAGTTTCCTTTCATCATGGGAACAGctGACCCGTTGTCTACATGGCGTGATTGTATTCCTTCTtcttgtgaaatgcattttcgTCCTAAGGATGAATAAAGTGATGGCCCCCTCAGTGACAGGACTGCGCCTCTCACTATCAACTATCATGTGGCCAGTGGTTGCAGGTATTATATTCATGACTGCTTATGCCTGCCTGGGAAACCTTGTGTTCCTGTCCACATCACGATCGTTCAGCACCATAGTGAGATCCTTCCAGACTGTCTTCACTCACTGTATGGGAGCCAGCAAGCTGCAGACACTGTCTTCACTGAATCGTATCCATCATGCTTCCATTTCTGTCTATTATGGGACTCTTTTCGTCATCATGACCATAACCTGGACTGCATTGATAATTGGAATCCTCACTTCACTCGCAAGAGCTGCTAAGAAGTCTTCAAAGAGGAAATACTTGGTGACTTTCTCCGACTACTTCTACTTGGATGAATTTGAGAACCTGGTGGATGAACTTCTGTTCAGGCTCAATGCCTTCTCTAACAGCCTGCACCACACTCTCCCAAATAAAGAGCAGAACTACCACGAGCAGGAAAGCCTCCTGACTTCACAGTCAGATTATGACTGCAGCCTGGACTCAGAGCACACCGCTGTCAGTGAAGACTGTGTGAAGAAGAAGGCGAGCAAAATTGAGATGCTCTTGTTGAAAAAGAATCCAGATGTGTACAATCTGATATTGCCCATTGAGGAAAAATCCCCGGATCAGAATGTTTTAAGTTCAAAGCTCGAATTGGAGACATTACGGCATTTTCAGATGAACCTAAATTGTAGCCCACAAATAGCAGGTCTAGAGGATGGCCATTTCCAACCCACAGCACAACTTCAAAAGGACCTTTCTAAAGTAAATGCTGGAGTCAAAGCAATTGATGCTGACAGTGCTGACCCTTCTTGCTCCTCTGTATCAGACTGCCACAGCTCCCCTATCATCCCTGACCACTACAATCTGGCCAAGCTTGGAGATGATTTGCCCCATATTCTATGTGGGACCAGGTGTCTAGATAAACAGGTAGCCCAGGGCAAAACTCTGGGGAGTCAGGTAAGCAACCGACAGAGCTCCACTTCTGCCAGTCTGTCCACCAAGAGCCGCAAGGTGCTGAAACGCTCTCACACCACCATAATCCAGCCATGGGACAATCCTACGGAGGTGGCAGACAGGAGAGCTGGCAACAAAATCTAT

Function

GO: NA

KEGG:

id description
K04987 PKD1L1; polycystin 1L1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43287 lncRNA downstream 959441 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 1047498 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 1158835 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 1464051 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 1528007 23576527 ~ 23578285 (-) True G34502
TU43480 lncRNA upstream 372767 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 676376 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 1033745 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 1153038 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 1153038 26292355 ~ 26336737 (-) True G34853
AMCG00019511 mRNA downstream 3719 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019510 mRNA downstream 25582 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019502 mRNA downstream 639761 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019500 mRNA downstream 1011628 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019501 mRNA downstream 1095238 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019509 mRNA upstream 13540 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019521 mRNA upstream 379710 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019524 mRNA upstream 465585 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019525 mRNA upstream 492380 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019527 mRNA upstream 2213900 27353217 ~ 27379929 (-) True AMCG00019527
TU43148 other downstream 1906684 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 4340796 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 5657719 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 9384840 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 10114296 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 4378679 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 4405914 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 4499249 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 4539912 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 7082747 32222064 ~ 32233398 (-) True G35476

Expression Profile