RNA id: AMCG00019517



Basic Information


Item Value
RNA id AMCG00019517
length 777
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00019517
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25373946 ~ 25407885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGGAAAGTACCCCCTGCATTAAGGAGTGCTTGGGTGAGTCAAAAAAGCCAGCAGCAGTGAGTGAGAAGTCCAATCCGTCGAAGAGACACAGAGATCGTCTGAACGCAGAGCTTGACAGACTTGCCAGTCTCCTGCCATTCTCTCCGGACATCATTTCAAAGCTGGATAAACTGTCTGTGCTGCGACTTAGCGTCAGTTACCTCAGGGTGAAGAGCTTCTTCCAAGGGTGCAGGCGCAAACTTGGCATCAATGGTACAGCAGTCATAGCAGACCTTCTGAAAGGTCTTTTGCAGAGGTCTTGTGTTGGGCTGAGCTTGGGACTTCAAATATATGCCCTAAGTAGCCTTCTAGAAAGTTACTATGTTCAGAAAATTGATTGCTTTttgaaatcatatttattaGAGCTCCtgCAAGAAAGTGAAACACACCTCATGAGAAAACTCAAGGTGTGCTCCAAAAAGCCTATGATTGCATCACGTCCTGTGTTTAGTCTGACTTGTGTGGGCCAGCAGTTCAACCCCATTATAATGCAGTCAGTTACATTCGTGCAGAAGGGCACTGATGAGAGAGtgtACACCCTGTTGCCATGTGATCTTATTCATAGAAATATTAGATACGTTCCCAAGAATGcCTGGTGCCATGGGGTTCAGCAACTTTCAGCGAAGGTGGTTTTGATGGGGCTTGGCAAGTCCGGTGCAGGAGAACAGTGGACAATAAAATTCTTTGTTGTGATCTCGGgaCGCTTGGCTGATTCAGATGtttacagaaattaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43456 lncRNA upstream 26218 25342261 ~ 25347728 (+) True G34742
TU43411 lncRNA upstream 252568 25121170 ~ 25121378 (+) True G34704
TU43400 lncRNA upstream 270074 25102389 ~ 25103872 (+) True G34695
TU43323 lncRNA upstream 1045927 24327440 ~ 24328019 (+) True G34632
TU43312 lncRNA upstream 1134133 24239416 ~ 24239813 (+) True G34621
TU43562 lncRNA downstream 843539 26251424 ~ 26326302 (+) False G34834
TU43563 lncRNA downstream 884470 26292355 ~ 26344732 (+) True G34834
TU43568 lncRNA downstream 890636 26298521 ~ 26300352 (+) True G34838
TU43598 lncRNA downstream 1107760 26515645 ~ 26515916 (+) True G34863
TU43634 lncRNA downstream 1710639 27118524 ~ 27156206 (+) True G34893
AMCG00019515 mRNA upstream 28870 25344822 ~ 25345076 (+) True AMCG00019515
AMCG00019513 mRNA upstream 30259 25310759 ~ 25343687 (+) True AMCG00019513
AMCG00019514 mRNA upstream 74327 25252179 ~ 25299619 (+) True AMCG00019514
AMCG00019508 mRNA upstream 160234 25169668 ~ 25213712 (+) True AMCG00019508
AMCG00019507 mRNA upstream 310372 25028594 ~ 25063574 (+) True AMCG00019507
AMCG00019516 mRNA downstream 33434 25441319 ~ 25466929 (+) True AMCG00019516
AMCG00019519 mRNA downstream 72534 25480419 ~ 25515290 (+) True AMCG00019519
AMCG00019520 mRNA downstream 118346 25526231 ~ 25536916 (+) True AMCG00019520
AMCG00019518 mRNA downstream 131848 25539733 ~ 25559090 (+) True AMCG00019518
AMCG00019522 mRNA downstream 151945 25559830 ~ 25560291 (+) True AMCG00019522
TU43194 other upstream 1678145 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 2748741 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 4763057 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 3893070 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 6916515 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 6922752 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 9432431 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 10638605 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile