RNA id: AMCG00019532



Basic Information


Item Value
RNA id AMCG00019532
length 399
RNA type mRNA
GC content 0.35
exon number 2
gene id AMCG00019532
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28035010 ~ 28035417 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTTCTGAGCATTATGATCTACTATTACATAATGATGTTAGCAAGGGCAATACTCTTAACAGAGTGTGCAAGCTTAGGGAGGAGATAGTTGCATTTCTGCGCAATTGCCACCACAAGAAAGCCAACACATATCTATGCTTGACAAGGAGTTTTTTGAGTGGACTTAATTTAGGACTACAGGAGAGGGATAAAACAGTTATTGACATTATTGAAAAACTGACtgcattgacaaaaaaaaaaaaaatggttattTTCTCTCCTGATCTGTGCCCAAATAAAATTATTCATTTCCCTACAGTGTGCAACTATAtccaatcatcatcatcagaaaTCACTCCTGTAATGTTGGAGTTTTTAGATAAACTGAGAACTAACTTTTCATTGAGATTTGATTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43673 lncRNA upstream 78044 27956767 ~ 27956966 (+) True G34926
TU43667 lncRNA upstream 274357 27760288 ~ 27760653 (+) True G34921
TU43662 lncRNA upstream 307367 27727417 ~ 27727643 (+) True G34916
TU43658 lncRNA upstream 554333 27480321 ~ 27480677 (+) True G34912
TU43634 lncRNA upstream 878804 27118524 ~ 27156206 (+) True G34893
TU43678 lncRNA downstream 139255 28174672 ~ 28193989 (+) True G34930
TU43684 lncRNA downstream 177168 28212585 ~ 28219309 (+) True G34934
TU43687 lncRNA downstream 264005 28299422 ~ 28299657 (+) True G34937
TU43688 lncRNA downstream 293900 28329317 ~ 28329834 (+) True G34938
TU43691 lncRNA downstream 493754 28529171 ~ 28529631 (+) True G34941
AMCG00019533 mRNA upstream 12 28034684 ~ 28034998 (+) True AMCG00019533
AMCG00019529 mRNA upstream 752100 27279720 ~ 27282910 (+) True AMCG00019529
AMCG00019530 mRNA upstream 1077421 26952697 ~ 26957589 (+) True AMCG00019530
AMCG00019531 mRNA upstream 1134281 26897667 ~ 26900729 (+) True AMCG00019531
AMCG00019528 mRNA upstream 1177986 26849325 ~ 26857024 (+) True AMCG00019528
AMCG00019535 mRNA downstream 577838 28613255 ~ 28710887 (+) True AMCG00019535
AMCG00019534 mRNA downstream 677387 28712804 ~ 28730320 (+) True AMCG00019534
AMCG00019537 mRNA downstream 790936 28826353 ~ 28889651 (+) True AMCG00019537
AMCG00019538 mRNA downstream 1047296 29082713 ~ 29100803 (+) True AMCG00019538
AMCG00019542 mRNA downstream 1232494 29267911 ~ 29272251 (+) True AMCG00019542
TU43194 other upstream 4339209 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 5409805 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 7424121 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 1265538 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 4288983 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 4295220 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 6804899 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 8011073 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile