RNA id: AMCG00019540


Basic Information

Item Value
RNA id AMCG00019540
length 486
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00019540
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29155337 ~ 29155822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGACCAGTCAAAAGGAGATACGGTGCCCTTGGTGCCGTGGCGTTACCAAGTTGCCAGCAGGCTTCTCCATATCTCAGCTCCCTGATGACCCAGAGATTATCACTGTAATTGCGATACCCCACGCTTCAGAACACACTCCGGTCTTCATCAGACTCCCCAGTAATGGCTGCTACATGTTGCCCCTGCCAGTGACCAAAGAGAGGGCGCTGCTGCCGGGGGACTTTGGTTGTCGGCTCCTGCCAGGCAGCCAGCAGAAGGGGGTCACTGTGGTGACGGTCCCTGAGCAGCAGGTCTTACAGGTTGGGCCAGGCATAGAGAGCGAAGAGGGGGAGGCTGAGAGACGCGGGGCTGTGAAAAGCTCCACTTGGTCTGGAGTTTGCACTGTGATACTGGTAGCCTGTGTTCTGTTGTTCCTGTTGGGCATCGTCCTGCACAACATGTCTTGTATTTCAAAACGATTCACAGTCATCTCCTGTGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43778 lncRNA downstream 205107 28949967 ~ 28950230 (-) True G35014
TU43760 lncRNA downstream 329669 28825320 ~ 28825668 (-) True G35002
TU43722 lncRNA downstream 508070 28640232 ~ 28647267 (-) True G34968
TU43683 lncRNA downstream 942948 28212139 ~ 28212389 (-) True G34933
TU43679 lncRNA downstream 961338 28192767 ~ 28193999 (-) True G34931
TU43856 lncRNA upstream 476372 29632194 ~ 29633736 (-) True G35083
TU43896 lncRNA upstream 562523 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 567857 29723679 ~ 29731767 (-) True G35111
TU43922 lncRNA upstream 615764 29771586 ~ 29772192 (-) True G35129
TU43937 lncRNA upstream 670835 29826657 ~ 29828650 (-) True G35144
AMCG00019541 mRNA downstream 328746 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019536 mRNA downstream 443735 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019527 mRNA downstream 1775408 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019525 mRNA downstream 3516310 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 3542208 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019539 mRNA upstream 92742 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019543 mRNA upstream 122975 29278797 ~ 29300537 (-) True AMCG00019543
AMCG00019545 mRNA upstream 247519 29403341 ~ 29403998 (-) True AMCG00019545
AMCG00019544 mRNA upstream 248241 29404063 ~ 29405022 (-) True AMCG00019544
AMCG00019546 mRNA upstream 285099 29440921 ~ 29441777 (-) True AMCG00019546
TU43148 other downstream 5955729 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 8389841 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 9706764 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 13433885 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 14163341 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 362174 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 389409 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 482744 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 523407 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 3066242 32222064 ~ 32233398 (-) True G35476

Expression Profile