RNA id: AMCG00019544


Basic Information

Item Value
RNA id AMCG00019544
length 804
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00019544
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29404063 ~ 29405022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCAGTTCAGGAGGAATCAGCTCAAGAAGCAGAGTACAATTGTAAGTGGAAATGACCTTACAATCTGCACAGATGggacaacaaaatgtggacaTAAGTATGACACAGCAGGATTGTTTCTGAAGGATGATACAAGGACACATTTAGGACTAAGGGAGCAGGCACCAGAATCAGCACAGTGCACTTCTGACACAGTAAAGGAAATGGTTCAGGATGTGATTAAACATGGTTTCGCTGAGCTAGATGTGCAATTTTGTGAAAACAgcattttcacaaaaacaactaATCTTGTTGGAGACAGGGCCAGTACTGAGATGAAATTCAATGAATTTGTGTTTCAGTATAGAGCAGATGTACTGCCCAACATAGTAGAAGGATTTGATCAGTGTAGTGAGGATGACAAGGCTGGGTTTAGCATTGTCAATGAACTCTGTTGtggattacatttaattgatgGTTTGGTACATCAGGCAAATGTAGCACTGTCAGTGTGGGAGGAGATGGTTTTTGGAGGCGACAGAGTAGGCAGTCTTTGTGTGCCAGGGTTGCACAAAACAGCTGGTGAGAGTGGCACTGTTGGGTTGATTAGGACAGTGTGCAAAACTGTAGAAGAGAAGGGATGTCAAAAAAGTGGGAAACCTGTGCAGTTTGAAAGAAAGGTCAAACTTAGTGCCACTTGTGCCTTTCAGAGGGAACcgaataaatgtaatgtttcacaGAGCAGGAGTGCATTTTCTGGATTCAGAACTGTTGATTTCATGAGTGAAAACCAACTGGTTGCTGAGTATTCGAGGACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43778 lncRNA downstream 453833 28949967 ~ 28950230 (-) True G35014
TU43760 lncRNA downstream 578395 28825320 ~ 28825668 (-) True G35002
TU43722 lncRNA downstream 756796 28640232 ~ 28647267 (-) True G34968
TU43683 lncRNA downstream 1191674 28212139 ~ 28212389 (-) True G34933
TU43679 lncRNA downstream 1210064 28192767 ~ 28193999 (-) True G34931
TU43856 lncRNA upstream 227172 29632194 ~ 29633736 (-) True G35083
TU43896 lncRNA upstream 313323 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 318657 29723679 ~ 29731767 (-) True G35111
TU43922 lncRNA upstream 366564 29771586 ~ 29772192 (-) True G35129
TU43937 lncRNA upstream 421635 29826657 ~ 29828650 (-) True G35144
AMCG00019545 mRNA downstream 65 29403341 ~ 29403998 (-) True AMCG00019545
AMCG00019543 mRNA downstream 103526 29278797 ~ 29300537 (-) True AMCG00019543
AMCG00019539 mRNA downstream 143368 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019540 mRNA downstream 248241 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019541 mRNA downstream 577472 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019546 mRNA upstream 35899 29440921 ~ 29441777 (-) True AMCG00019546
AMCG00019556 mRNA upstream 130722 29535744 ~ 29546774 (-) True AMCG00019556
AMCG00019554 mRNA upstream 233969 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019557 mRNA upstream 356307 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019555 mRNA upstream 368663 29773685 ~ 29785242 (-) True AMCG00019555
TU43148 other downstream 6204455 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 8638567 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 9955490 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 13682611 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 14412067 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 112974 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 140209 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 233544 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 274207 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 2817042 32222064 ~ 32233398 (-) True G35476

Expression Profile