RNA id: AMCG00019556


Basic Information

Item Value
RNA id AMCG00019556
length 2100
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00019556
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29535744 ~ 29550162 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTTTTGGATTTTCGGCATGATGATCCAGAAGAGCTTCTCTTGGATCTGGGATTTGGGACAGAGGAGCCTGACATTGCCATCAAAATCCCAGCCCGGTTTATCAACTACCAATCCAAGGCAAGAGGCATCAATATTCAAATCTTCCTGCAAGCTCAGAAAATGCGGATGGATATTGAGAACCCAGACTTTACCAATCGCTTCCGAGAGCTGGAGGTTTTGCAGCAGGTAACCAGTGCCTTCTCCTCTCTGTTCAATAACCTAAGTGGTGATAAACAGCAGCAAGTCCCTGTAAGCAAGAAGGCTGATGCTGGGGAGATGAACACTCCAGCAGTgcaagaaaagagaagaaagctGGGCATGCTGTTCCGGCGAGCTTCCAAAAAGACCCTGAGCTTAGCAAAGAGCATGCAGGAGCCACCCAGTGCACTGCAGATTCCTGGGACAGAGTCTTCGGCAGATCCGCTCCAGGACAGGAGGACGTTGTTTAAATGCTCGAGGCCTTGTCTCCCCGAGAACGCATGCTTGTCGCCGCTGGCAGAAGAGCAGAGCCCGGCTGGAGAAAAATCGTCCGTGTACTTTCCCGATGATGACTTCAGTCCCGCGCCCATGAGCTCCGAATGCCCTCCGCTTCTGCAGGACAGAGGGGAGCCACATCAGCAAACCTCGGAGGTGCTGCTGAGACAGAGGGCAGCCAAGGAGCCTCGCTGTGTCACTGGGAGCTCGATGAGGAGAAGAAGCGCCGGAGACCGACAGACTCCCGAGTCCTTTGAGATGGAAGAGATTCAAAGCTTCGATGAAGGGAGTATCACTGGACCAggaatggaagaaaaaatagagGGCTTTGCTATAAGGACAAACAGTTGCCAGTCGGACAGCAGTGGATTTCTGGAAGAACCTTCTGTTCCTTCACGTTTACAACAAGCATCACCTGCAACTGAGGTACTGAAGGCACTGAATACCATATACGGAGACAGCATAGACAGCCTGAGTACTCTGAAAGGAAGTAAGGATCTCTCAAATACAGAATGTAACCAAGAGGCAGAACCTTCACAGACAACACATTTCTCATATGGGGATGAAACATCCACACATTCAAATCTGGGATTCCAGCAAGAAAACAAGCAGGTGGAACATGACAGCTCTGAAGCAGTAAGCAGCTGTAAATCAACGCAGAAGATTTCtgcaaaaacaattttttttgaCCAAACATTATCTGAATCCAGCTCTTCGTTTGTGTGTCAGCAAACAAGTTTTGACATAGGTAAAATCAACAAGATCAAGGGATCAAatgaacttttaaaatcaagGTTCAGGTCCGCTAGATCAGTCACAGTACAGATGCCTTCAAATCTGGGTTCATTTTCCCAAAATACCATCAAACAACGATCCCCGTCTAAAGGCCTTTCTTTAGAATCTGTCCCCAAAACCGCTCAACAAGATTTCTTCTTGGAAAAGGCTGGGTCAGATGTTTCAAGTTTCCATTGCACAGATCCTGAAGATAATTTTGAGCAGTCAACCCCTATAAATACAAGACCTAAGCAAGCTTCTTCAGCACTGTTCCTTTTACATGGAAATCAAAGCTCCCGCTTAAGAAAAAGATCCATATCTTTGGAGAGTGGGCTTATGCAAGATGACAGACAATATGAGGAGACATCAGACTCTCGTTGTTGTAAACATCACTGCAGCTGCTGTTCCTCACACAGCCTGTTTTCTCCAAGTGAATGTCATTACGCAATGGATGAATTGGAAGGGATGATCAGATCTTTGAGACAATTCCGTGAAACACTGACAGACATTGAAGAGCAACTCGCAAACGAACAGGCTTCAGTTTACAACATCCTCTCAGATAATGAGAAAGAGGAGGTCAGATACATACAAGATTTGCGAAATGCTGTGAAAGAGGAAGTAAATGAGTTAGAGCTTCAACTGGCAGACCTGGCCCATAATTCTGATGATGGGTTTAAAATGGCTAATGGACGAGCAGTCATTccttcatttgcatttgaagaCGCAACATTCAGGCCTTTCCTCTCAGTCAAATCTGATCACCAAATCAACAAGGAGTGTTTCCACACAGTGTTCGTTGCTGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43778 lncRNA downstream 585514 28949967 ~ 28950230 (-) True G35014
TU43760 lncRNA downstream 710076 28825320 ~ 28825668 (-) True G35002
TU43722 lncRNA downstream 888477 28640232 ~ 28647267 (-) True G34968
TU43683 lncRNA downstream 1323355 28212139 ~ 28212389 (-) True G34933
TU43679 lncRNA downstream 1341745 28192767 ~ 28193999 (-) True G34931
TU43856 lncRNA upstream 85420 29632194 ~ 29633736 (-) True G35083
TU43896 lncRNA upstream 171571 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 176905 29723679 ~ 29731767 (-) True G35111
TU43922 lncRNA upstream 224812 29771586 ~ 29772192 (-) True G35129
TU43937 lncRNA upstream 279883 29826657 ~ 29828650 (-) True G35144
AMCG00019546 mRNA downstream 93967 29440921 ~ 29441777 (-) True AMCG00019546
AMCG00019544 mRNA downstream 130722 29404063 ~ 29405022 (-) True AMCG00019544
AMCG00019545 mRNA downstream 131746 29403341 ~ 29403998 (-) True AMCG00019545
AMCG00019543 mRNA downstream 235207 29278797 ~ 29300537 (-) True AMCG00019543
AMCG00019539 mRNA downstream 275049 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019554 mRNA upstream 92217 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019557 mRNA upstream 214555 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019555 mRNA upstream 226911 29773685 ~ 29785242 (-) True AMCG00019555
AMCG00019564 mRNA upstream 589957 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019563 mRNA upstream 620741 30167515 ~ 30172280 (-) True AMCG00019563
TU43838 other downstream 13760 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 6336136 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 8770248 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 10087171 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 13814292 15692482 ~ 15721452 (-) True G33381
TU43875 other upstream 91792 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 132455 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 2675290 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 4963959 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 5508245 35055019 ~ 35055444 (-) True G35867

Expression Profile