RNA id: AMCG00019563


Basic Information

Item Value
RNA id AMCG00019563
length 2424
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00019563
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30167515 ~ 30172280 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGAAAGACAGATTTACGAATTGATAGGTGGTCGGGTTTTGTTTGGCTGGGCAGCTTTACGCAAAAAGTCGAGGAGCTCTGCGTTTCCTCTCCTTAAAGGATTAAGGCGAGTGATGGCCACCAGGTGGGGGGCAGAGCTGCAGTCCCAGCGACACAGAACCGCTATCTGGGAATAAACTAAAGCAATAGCACGCAGAAAATCACCTTACATTTCAACTTCGCCGAGAGAACAGACGTGGAAACTGAGCTGAAACAGAGGCCTCGTTTTTCgaactttttttcctcttttcgcTGCTGTGACCTGAAGGGGACATACTTTTTACCACCATTGCTCTCCGTGGAACACATGTCCTAGCGGTCAAGTAGAGTTCAGTAAGGCGTATCTTCTGAAGGGACCATCATTAAAgagtctctctcgctctctctctctttctgtctcgcATTCTCCATTGAATCGTGTTGCTTTGCACACCATTTGCACCAGCAAGCAGGACATGACGACTGAACCTCCCCAACAGCAACTGGACCCGCCGCCACCTCTAAGGTCGAGCCCGGCCTCCGGAGTTTTGCATTCCGCCCTGATGAGCACACAGTCCGCGGTGGACAATGCTGCCGCTTCCACCAAAGGCAAGAAGGCGAGCTCCGGGCTCAGGCGCCCTGAAAAGCCGCCTTATTCCTACATTGCTCTCATCGTGATGGCGATCCAGAGCTCTCCCACCAAAAGATTAACCCTGAGCGAGATATACCAGTTCCTCCAGGCCAGATTCCCATTCTTTAGAGGATCTTACCAGGGATGGAAAAACTCTGTTCGTCACAATTTGTCCTTGAACGAATGTTTCATCAAACTACCCAAGGGACTGGGAAGACCAGGGAAAGGGCACTACTGGACCATTGACCCGGCCAGTGAGTTTATGTTCGAGGAGGGGTCCTTCCGACGCCGACCAAGAGGATTTCGGAGAAAATGCCAGGCTTTGAAGCCCATGTATCGGATGATGAACGGCATCGGTTTTGGCACTTCAATATTACCACAAAGCTTTGATTTTCAAGCGCCGTCCGCGTCTTTAGCGTGCCACACCAACGGCTATAACTTAGATATGATGACTAATTCCATGGCAGGGAGCTATGATGGACTAAGCAGTGGCCACCATGTTCCTCACATGTCTCCCAGTCCTGGGTCCACTTACATGGCCAGCTGCCCAGTGACATCTAACGGAGACTACGGTCCAGATAGCAGCAGTAGTCCAGTGCCCTCTTCCCCTGCCATGGCGAGTGCCCTGGAGTGCCATTCTCCCTATGCAAGTACGTCTGCGCACTGGGCATCGTCGGGTGGATCTCCGTATATTAAACAACAATCCCTGGGCACTAACAATCCCACGTCTTCAAGTTTACATTCTAGCATGTCCTCCTACTCCCTAGAGCAAAGTTATCTCCATCAAAATGCCAGGGAAACAGCTGACATTTCAGtgggGATACCTCGATACCAAACCCACTCCTCACCTGTGTGTGACAGAAAAGATTTTGTCTTGAACTTTAACGGGATCTCATCCTTCCACCCCTCGGCCAGTGGCTCCTACtatcaccaccaccatcaccaccaccaccaccagagCGTCTGTCAGGACATCAAGCCGTGCGTCATGTGAAAACAGCCATGCTCACATTGTTCTCTGTCATGCAAGAAAGTCCCAAAATATGTAGTTGGGCCAGAAGGTATAGACAAGTTCATTTCAGCACCTTCACCCCGACCCTTTGACGGGAAACATTTATTATCCTCGGGATTCCAGGTTCAGCTGAAAGGACAGAGAATCTGCTCCAAACACCTGACCTCCCGGGTGCCTctataaaacataaatggatCATTCTTCCTAATAATACATGTTGTTTTGTCAGTCCAAGCTTATATCTTCTGAATTGATTACAGTCACTGTAGCTAAAGGCGTGGAAAGCCAATAAAAGGTTTCAATATTTGGAGAGTTGCTGTTTAACAGAGTCCTCTTTCTTCTACTTGAGGTAAACCCGCCATCAACTATACTTTCATTTTATACTGCAACCGGTGGGTCGAAGTCTTAATGCAAGTTTTCTTCATGGACTTTATGGAAGAATCGACAATTAAATGTCTCACAACACAGCttggtttttaatttcaatacagCACTAAGAAGTCGAAatggaaagcaaaaacaaaacaaaaaaaagttattttggcCTACAAACCATTTTGCGTTATATCATGTATGTTATTAATTCTGTTCATCTGCATTTGCTTCTTTTAAAGGagtgaaacattttcaatgtatattaagtttaattttaatgtctttcAGTAGACGATTTACTATATAAACTATATTCGaaggtataaaaataaatataaacgtAGGCCTacacaaagctttttttttttttaattaaataacattttg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43951 lncRNA downstream 41185 30081650 ~ 30126330 (-) True G35157
TU43938 lncRNA downstream 319657 29847644 ~ 29847858 (-) True G35145
TU43937 lncRNA downstream 338865 29826657 ~ 29828650 (-) True G35144
TU43922 lncRNA downstream 395323 29771586 ~ 29772192 (-) True G35129
TU43897 lncRNA downstream 435748 29723679 ~ 29731767 (-) True G35111
TU43993 lncRNA upstream 239918 30412198 ~ 30442590 (-) True G35190
TU44022 lncRNA upstream 334790 30507070 ~ 30520464 (-) True G35214
TU44073 lncRNA upstream 420661 30592941 ~ 30674883 (-) True G35243
TU44140 lncRNA upstream 864844 31037124 ~ 31037337 (-) True G35304
TU44261 lncRNA upstream 1235702 31407982 ~ 31410657 (-) True G35397
AMCG00019564 mRNA downstream 29354 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019555 mRNA downstream 382273 29773685 ~ 29785242 (-) True AMCG00019555
AMCG00019557 mRNA downstream 400909 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019554 mRNA downstream 521557 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019556 mRNA downstream 620741 29535744 ~ 29546774 (-) True AMCG00019556
AMCG00019566 mRNA upstream 11235 30183515 ~ 30184507 (-) True AMCG00019566
AMCG00019571 mRNA upstream 275913 30448193 ~ 30462200 (-) True AMCG00019571
AMCG00019572 mRNA upstream 301166 30473446 ~ 30477047 (-) True AMCG00019572
AMCG00019573 mRNA upstream 393756 30566036 ~ 30568189 (-) True AMCG00019573
AMCG00019575 mRNA upstream 404897 30577177 ~ 30591280 (-) True AMCG00019575
TU43881 other downstream 482213 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 521552 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 617353 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 645531 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 6967907 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 2049784 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 4338453 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 4882739 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 12371836 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 12472044 42644324 ~ 42656393 (-) True G36862

Expression Profile