RNA id: AMCG00019573


Basic Information

Item Value
RNA id AMCG00019573
length 234
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00019573
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30566036 ~ 30568189 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTCGTTGCAGTTTTGGGAAGTGATCAGTGACGAGCATGGCATCGACCCCACTGGCAGTTATCACGGTGACAGTGATCTGCAACTGGAAAGAATTAACGTTTACTACAATGAAGCCAGCGGTAACAAGTATGTCCCTCGTGCTATCCTTGTGGACTTGGAGCCTGGCACAATGGACTCTGTCAGATCTGGGCCTTTTGGACAAATCTTCAGGCCTGATAACTTTGTCTTT

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44022 lncRNA downstream 45572 30507070 ~ 30520464 (-) True G35214
TU43993 lncRNA downstream 123446 30412198 ~ 30442590 (-) True G35190
TU43951 lncRNA downstream 439706 30081650 ~ 30126330 (-) True G35157
TU43938 lncRNA downstream 718178 29847644 ~ 29847858 (-) True G35145
TU43937 lncRNA downstream 737386 29826657 ~ 29828650 (-) True G35144
TU44073 lncRNA upstream 24752 30592941 ~ 30674883 (-) True G35243
TU44140 lncRNA upstream 468935 31037124 ~ 31037337 (-) True G35304
TU44261 lncRNA upstream 839793 31407982 ~ 31410657 (-) True G35397
TU44258 lncRNA upstream 853840 31422029 ~ 31427539 (-) True AMCG00019597
TU44323 lncRNA upstream 1178436 31746625 ~ 31746866 (-) True G35448
AMCG00019572 mRNA downstream 88989 30473446 ~ 30477047 (-) True AMCG00019572
AMCG00019571 mRNA downstream 103836 30448193 ~ 30462200 (-) True AMCG00019571
AMCG00019566 mRNA downstream 381529 30183515 ~ 30184507 (-) True AMCG00019566
AMCG00019563 mRNA downstream 393756 30167515 ~ 30172280 (-) True AMCG00019563
AMCG00019564 mRNA downstream 427875 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019575 mRNA upstream 8988 30577177 ~ 30591280 (-) True AMCG00019575
AMCG00019576 mRNA upstream 60533 30628722 ~ 30629555 (-) True AMCG00019576
AMCG00019581 mRNA upstream 286749 30854938 ~ 30857867 (-) True AMCG00019581
AMCG00019582 mRNA upstream 308062 30876251 ~ 30894784 (-) True AMCG00019582
AMCG00019583 mRNA upstream 340675 30908864 ~ 30919174 (-) True AMCG00019583
TU43881 other downstream 880734 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 920073 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 1015874 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 1044052 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 7366428 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 1653875 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 3942544 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 4486830 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 11975927 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 12076135 42644324 ~ 42656393 (-) True G36862

Expression Profile