RNA id: AMCG00019581


Basic Information

Item Value
RNA id AMCG00019581
length 1685
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00019581
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30854938 ~ 30857867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAACTGCGCAAGCCAACCGCAGCGCCCTGTAGCATACACCTTCcctaagaaataattaatattacaaatgcGTCAAACATTGACATTCCTTGGAGGTCAATCTACTACATAAATACTGCCCAGCGCTGCCAAAGCCATTCTACTCCAAAACACGAGCTTACACAGTACCCCTGctcttgtatttattgtatttatttatttggtaatGCGTGGATTATTATCTCTGAGATATCCTGGGGTGGCAGCAGTGGCCCAGGTCCTTCTGGCCCTTTCCCAGGGCTCTCCACTTCACGCTCCCGAGCCGCTGGTGTGTGCGCCCTGCACCGCGGACACCCTGCTCCAGTGCCCCGCCGTGGCGCCGGACTGCGCCGAGGTGCTGAAGGAGCCGGGCTGCGGCTGCTGCTACGCCTGTGCCCTGCAGAAGGGCGCCCTGTGCGGGGTGTACACGGCCCGCTGCGGCACTGGCTTGCGATGCCACCCGCAGCTGGGCGAACAGCGACCTCTCCATGCGCTGATCCGAGGCCACGCCGTGTGCATGGAGCCGTCAGAAGCCGCCAGGATCCAGGCTGTGCAGGCTGCAGaaaatgaaaatgctaagAACATGGCTGTGGACCGAGACCAGGTGTCTCTTCAGTACCGCCTGGGCCACGTCACGCACAGCAAGCCCTTCGAGCCCAGAGAGGCGACAGAAGCCCAGGAGAGCATGAAAGCCAATATCAATGCCAACCGAAAGAAACTCATGGAGCAGGGTCCATGCCAAGTTGATCTACATAGAGCCCTGGAAAAGATTACAAAATCCCAGCAGAAGACTAAGTTTTATCTTCCCAACTGTGACAAACACGGGTTCTATAACCCTAAACAGTGTGAGACATCTCTAGAAAGCCAAAGGGGAAAGTGTTGGTGTGTCACACCTTGGAATGGTAAAATGATTGCTGGATCTCTGGATCTCCCAGGAGAAATGGACTGCCAGCAATACCCATCTTTGGTTGGACAGGAATAAATTCACAGATTCAATTCTTGTTTAATTTCACCTTGTGTATTTAGAATAGTTCACCAGTTCACAGacacttttttaatatgtatctatttttaaagttgtatttatttgtttcagttcagAAAATGTATCTTCTGAAACTTTCACAGAACTTAAAAGactatttaacaaatatatccttatttattttctttcaatatgcAATgggtatacatattttttataaacgGTGgccttatttgtattatttcattgtaAATAGTAAGACATTGTACATAACTGTATAAATCACCATGATTACCTCACCTAAGtgttttctcaagttttttttaatattgacttttttttagaaataaaataaatataaatgttaatgtgTTATTGTAAATGCTAAAACAAAGTGCACTGCAAAAACTATTTTATCATTTCATGTTGATTCACTATCCAGACAATGTCTGCTATGGCTATGTGCAGTTGCACAACATGTGGAtgcacaatatgtatatatatatatatgcacacacacaaatatgtaatgACTTGACTTGCTGCTACAAGAAAGCTGCTATCATTGTGCTTTACCTTAAGCCAATACTTAATCACTtgaatatattacttttattagttaacttttattattattacaaaatattgtaaaatgatttaataaaggTTTTCACCACGA

Function

GO: NA

KEGG:

id description
K23578 IGFBP1; insulin-like growth factor-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44073 lncRNA downstream 180055 30592941 ~ 30674883 (-) True G35243
TU44022 lncRNA downstream 334474 30507070 ~ 30520464 (-) True G35214
TU43993 lncRNA downstream 412348 30412198 ~ 30442590 (-) True G35190
TU43951 lncRNA downstream 728608 30081650 ~ 30126330 (-) True G35157
TU43938 lncRNA downstream 1007080 29847644 ~ 29847858 (-) True G35145
TU44140 lncRNA upstream 179257 31037124 ~ 31037337 (-) True G35304
TU44261 lncRNA upstream 550115 31407982 ~ 31410657 (-) True G35397
TU44258 lncRNA upstream 564162 31422029 ~ 31427539 (-) True AMCG00019597
TU44323 lncRNA upstream 888758 31746625 ~ 31746866 (-) True G35448
TU44334 lncRNA upstream 1214190 32072057 ~ 32072286 (-) True G35458
AMCG00019576 mRNA downstream 225383 30628722 ~ 30629555 (-) True AMCG00019576
AMCG00019575 mRNA downstream 263658 30577177 ~ 30591280 (-) True AMCG00019575
AMCG00019573 mRNA downstream 286749 30566036 ~ 30568189 (-) True AMCG00019573
AMCG00019572 mRNA downstream 377891 30473446 ~ 30477047 (-) True AMCG00019572
AMCG00019571 mRNA downstream 392738 30448193 ~ 30462200 (-) True AMCG00019571
AMCG00019582 mRNA upstream 18384 30876251 ~ 30894784 (-) True AMCG00019582
AMCG00019583 mRNA upstream 50997 30908864 ~ 30919174 (-) True AMCG00019583
AMCG00019584 mRNA upstream 89840 30947707 ~ 30979946 (-) True AMCG00019584
AMCG00019585 mRNA upstream 214309 31072176 ~ 31078281 (-) True AMCG00019585
AMCG00019590 mRNA upstream 401942 31259809 ~ 31289751 (-) True AMCG00019590
TU43881 other downstream 1169636 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 1208975 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 1304776 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 1332954 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 7655330 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 1364197 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 3652866 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 4197152 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 11686249 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 11786457 42644324 ~ 42656393 (-) True G36862

Expression Profile