RNA id: AMCG00019583


Basic Information

Item Value
RNA id AMCG00019583
length 811
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00019583
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30908864 ~ 30919174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGTGGCCGAAGCCACAGAGGTGGATTTGAACATGCGAGTTGGCCTCCACACAGGCAGGGTGCTCTGTGGGGTTCTTGGGCTCCGTAAGTGGCAATACGATGTCTGGTCCAACGATGTAACATTGGCCAATGTAATGGAAGCTGGTGGATTACCTGGGAAGGTTCATATCACAAAGACTACTCTCGAGTGCCTCAATGGAGACTACGAAGTTGAGCCTGGGTATGGCCATGAGAGAAAtacttttcttcagaaacacaaTATTGAAACCTTTTTTATTGTGCCATCCCATCGACGCAAGATATTCCCTGGATTAATCCTTTCTGATATAAAACCTGCTAAAAGGATGAAATTCAAAACTGTTTGCTACTTACTAGTCCAGCTCATGCATTGCAGAAAGATGTTCAAAGCTGAGATTCCCTTTTCAAACGTCATGACCTGTGAAGATGATGACAAGAGAAGGGCGCTCAGAACTGCTTCTGAAAAGTTAAGGAATCGTACATCCTTTTCCACTAATGTAATACACAACACGCCCGGCACCAGAGTAAACAGGTATATCGGCCGCCTAATTGAAGCTCGACAGACTGAGTCAGAAATGGCAGATTTACATTTCATCACATTAATGTACAAACGTGCTGAGCGGGAGCAGAAATATCATCAGCTTCACGATGAGTACTTCACCAGTGCAGTAATTCTCTCACTCATTCTGGCTGCCTTATTTGGTCTTGTCTACCTTCTAATAATACCACAGTATGTATCACCTGTCATAAATATTTACTTCTCCATGTCTTCATACAGATttgactttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44073 lncRNA downstream 233981 30592941 ~ 30674883 (-) True G35243
TU44022 lncRNA downstream 388400 30507070 ~ 30520464 (-) True G35214
TU43993 lncRNA downstream 466274 30412198 ~ 30442590 (-) True G35190
TU43951 lncRNA downstream 782534 30081650 ~ 30126330 (-) True G35157
TU43938 lncRNA downstream 1061006 29847644 ~ 29847858 (-) True G35145
TU44140 lncRNA upstream 117950 31037124 ~ 31037337 (-) True G35304
TU44261 lncRNA upstream 488808 31407982 ~ 31410657 (-) True G35397
TU44258 lncRNA upstream 502855 31422029 ~ 31427539 (-) True AMCG00019597
TU44323 lncRNA upstream 827451 31746625 ~ 31746866 (-) True G35448
TU44334 lncRNA upstream 1152883 32072057 ~ 32072286 (-) True G35458
AMCG00019582 mRNA downstream 14080 30876251 ~ 30894784 (-) True AMCG00019582
AMCG00019581 mRNA downstream 50997 30854938 ~ 30857867 (-) True AMCG00019581
AMCG00019576 mRNA downstream 279309 30628722 ~ 30629555 (-) True AMCG00019576
AMCG00019575 mRNA downstream 317584 30577177 ~ 30591280 (-) True AMCG00019575
AMCG00019573 mRNA downstream 340675 30566036 ~ 30568189 (-) True AMCG00019573
AMCG00019584 mRNA upstream 28533 30947707 ~ 30979946 (-) True AMCG00019584
AMCG00019585 mRNA upstream 153002 31072176 ~ 31078281 (-) True AMCG00019585
AMCG00019590 mRNA upstream 340635 31259809 ~ 31289751 (-) True AMCG00019590
AMCG00019592 mRNA upstream 397488 31316662 ~ 31340999 (-) True AMCG00019592
AMCG00019597 mRNA upstream 504323 31423497 ~ 31427583 (-) False AMCG00019597
TU43881 other downstream 1223562 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 1262901 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 1358702 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 1386880 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 7709256 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 1302890 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 3591559 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 4135845 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 11624942 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 11725150 42644324 ~ 42656393 (-) True G36862

Expression Profile