RNA id: AMCG00019585


Basic Information

Item Value
RNA id AMCG00019585
length 1797
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00019585
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 31072176 ~ 31078281 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGTTGTAACTACCAATCCCACTGTTGGCAAACAGTCGTTAGatATGTCTGAATTTCGAGAGGTCTTTTCCAAAGCCAAACACATAGCAATAATTACTGGTGCGGGGGTCAGTGCAGAAAGTGGGGTTCCTACCTTCAGGGGAGCTGGAGGCTACTGGAGGAAGTGGCAGTCGCAGGACCTAGCGACCCCGGAGGCCTTCTCGAGAAACCCCTCCCGAGTGTGGGAGTTCTACCACTACCGGCGGGAGGTGATGCTGACCAAGGACCCCAACCCGGCCCACCTGGCCATAGCGGAGTGCGAGGCGAGGCTGAGTAAGCAGGGCCGCTCTGTGGTGGTCATCACCCAGAACATCGACGAGCTGCACAAGCAGGCTGGGTCCAAACACGTCTTGGAAATTCACGGAAGCTTATTCAAAACCAGATGTATCAGTTGTGGAAACATAGCAGAGAATCGCACAAGCCCAATTTGCCCTGCCTTGGAAGGGAAAGGGTGTGATGTGAACCACTGCAATGGCCTCCTGCGCCCTCACGTGGTCTGGTTTGGAGAAACGCTCGACTCTGACATCTTGACTCGGGTCGAAGAAGAACTAGAAATCTGTGACCTTTGTTTGGTGGTTGGCACCTCCTCAATAGTCTATCCTGCAGCCATGTTTGCACCTCAGGTTGCAGGTAGAGGGGTACCAGTAGCCGAGTTTAACATGGAGAGCACCCCAGCCACAAACAGGTTCAAATTTCATTTCCAGGGTCCCTGCGGTACTACTCTGCCTCCTGCGCTGGCCCGCCATGAGAGCGAAGTCATCTCGTGAGCGCAGGAGGAGGGAAGACGGGTCGAAATGCAAAACCCCAAATGCACTTCACATATTGTGTGTTACACTAACAGGTGCACTTTAAGAAAGCAATGCTCTGCTGTTATATTTCCTAATCAATTTCAGGTAAATGACAATCTAATATGAGATTCAGCCAAGAGGTATTCCCCCCAGCTTCTGAACGGAGAATTAAAGTAGTCCAGGTACTCTGATTTACCAGTTTGTTACCAATGTTACTACTTAAAGGAACAGGTGGCTAGCACTGGATTTAAGCATGGAGCTAACTGGAAATAAAGAACAGCTGTAGTTTTCTAGATATGGAACCTAGAGGGGATTATTTTAACTATGTCCATGTTTAATATGATGAATCATTAATTACTTGTGAAAGTAAttaagttttctttattttcctttgctggTTGTTCAACAGAATTACACATTGTTTACTTATTCACTGCAGTTCATATTCTGAGGATTACAATTTATTTCAGCTTTTGGTTTTGTGATAATTTTGCAAGTTATATTTTGCCTTTGCAATAAAGCAGTGCCTAGGCCTGGTTTATAATGATGTTACGCTACAATACGTTGTTCCTCCAAATGTTGCTTCTGAGACGTTATGTTAACAAGTCAACCCATAGGTTCCCCGGAAAAAGGATAAACCAAAGGTGCAGTGTGAAGGATTGGTACTCTGTATGGCTGGCAGCTtgatttttcatattattttcagttctaGGCTGGAGATCATACCAAATATCGAACAAGTCTTGTCACTCAAGTGAAGAATGCATTCTTTACCAAGTATGTTGTGATTGCAGAAGAGAGATGACTTTAGTTGCTCTTCCATTTATCTTTGGCAACAAACCACATGGTCGGCTGCTGCTGGAGAGGTAGAATGTAGGTCATAGGGGGTCTgttactgtttttatgttttttgttccattGTTTTTTTGGTAGTGAATGTAAGTGACATAGTTTCATTTAAGAATG

Function

GO:

id name namespace
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0006476 protein deacetylation biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11415 SIRT5, SIR2L5; NAD+-dependent protein deacetylase sirtuin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44140 lncRNA downstream 34839 31037124 ~ 31037337 (-) True G35304
TU44073 lncRNA downstream 397293 30592941 ~ 30674883 (-) True G35243
TU44022 lncRNA downstream 551712 30507070 ~ 30520464 (-) True G35214
TU43993 lncRNA downstream 629586 30412198 ~ 30442590 (-) True G35190
TU43951 lncRNA downstream 945846 30081650 ~ 30126330 (-) True G35157
TU44261 lncRNA upstream 329701 31407982 ~ 31410657 (-) True G35397
TU44258 lncRNA upstream 343748 31422029 ~ 31427539 (-) True AMCG00019597
TU44323 lncRNA upstream 668344 31746625 ~ 31746866 (-) True G35448
TU44334 lncRNA upstream 993776 32072057 ~ 32072286 (-) True G35458
TU44347 lncRNA upstream 1103743 32182024 ~ 32183570 (-) True G35471
AMCG00019584 mRNA downstream 92230 30947707 ~ 30979946 (-) True AMCG00019584
AMCG00019583 mRNA downstream 153002 30908864 ~ 30919174 (-) True AMCG00019583
AMCG00019582 mRNA downstream 177392 30876251 ~ 30894784 (-) True AMCG00019582
AMCG00019581 mRNA downstream 214309 30854938 ~ 30857867 (-) True AMCG00019581
AMCG00019576 mRNA downstream 442621 30628722 ~ 30629555 (-) True AMCG00019576
AMCG00019590 mRNA upstream 181528 31259809 ~ 31289751 (-) True AMCG00019590
AMCG00019592 mRNA upstream 238381 31316662 ~ 31340999 (-) True AMCG00019592
AMCG00019597 mRNA upstream 345216 31423497 ~ 31427583 (-) False AMCG00019597
AMCG00019598 mRNA upstream 351040 31429321 ~ 31432563 (-) True AMCG00019598
AMCG00019596 mRNA upstream 377847 31456128 ~ 31467641 (-) True AMCG00019596
TU43881 other downstream 1386874 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 1426213 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 1522014 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 1550192 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 7872568 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 1143783 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 3432452 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 3976738 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 11465835 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 11566043 42644324 ~ 42656393 (-) True G36862

Expression Profile