RNA id: TU44258


Basic Information

Item Value
RNA id TU44258
length 3663
lncRNA type sense_over
GC content 0.36
exon number 5
gene id AMCG00019597
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 31422029 ~ 31427583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAAATCCGGAGTTGCTGTAAACGGAGAGTGTTTTGGGCGGTGGGATAAACTTATCTGTGTTGCTGCATGTCTCAGCATTTTTTCTCGTCCGTTTTCGTGACTCCATTTATCTCCTCTCAACACACAAGTTAAACCCCTAACGTTATCCGTCGTCGACAGAGATACGGGCAGACTCCGCGTCCTGTTCAGTCGTTCACTTGTCCTGTCTCAGTGCTTTGCGGCAGTGCGAGCAGCGGACTTCGCCAAGGTCATCAAGATGTCCGTCGACTGGGTCGGATTTGGATATGCAGCTCTTGTTGCATCCGGAGGAATCATAGGTTATGTTAAAGCAGGGAGCGTGCCCTCCTTAGCTGCTGGCCTGGTCTTCGGGGGCCTGGCAGGGCTGGGGGCGTATCAGATATCACAGAACCCAAAGAACGTGTGGGTTTCTCTGGCGGCATCAGGAACCTTGGCTGGTGTCATGGGGATGCGATTTTTCAATTCTGGAAAGTTTATGCCTGCTGGCCTCATTGCAGGGGCGAGTTTACTGATGGTTGGGAGGATTGGTGTGAAGATGTTACAGAAACCGCATGACCCATAATAAAAGTCAGTTACAGAAATCTATTTCTGAAAGACTCTTCTATGCAAAACCAGgttattttcttccttgattatatatttactgCTGTtagttgattttcttttttgccaATAAAATAACTCATTGAAATCGATTACTGGAGTTAAATTGGGTAATCACAATGTgaacataattttgttttctttatattggAGAAAGGTTTTCTGGTGCTTTCCTGAAGGTTTCTTTCATATTGCACACTGATAACTGACCGTTTTGGTCGACTCTTCACTTCAGTGACGGAAAATTACCTGAAATGGCAAGAGAGAAGAGATTCTGGTTGGCATAGTTATAGACAAGTATTTGTTGTGGGCATTATCACATTGGTTTCTcatttcagaaactggattATATCTCTGTTTTACTATTGATATTAAGGTTGGTATTAAAGCTCTCCAGATGTGTGTGGTTTATAAGTCAGACAGTTAACTATGTGCAATTATAGGAGGACATTCATAACTTATTTGTTTACTACCAtgttgacaaattaaaaccGTTTCATACCTCCTCCACACCATATTTTAAGTGTTTGCATGGGACCTTGGCAAATGGTCCATGCGATTTGAAGATCTGGTTATGCTTTTCTTCACAGATGTTTCATTTTCTCACTGTCAAAGGGTgtaaaagatacaaaatatttgacTGGCCCAAACGCTGAATGATTTTTTTGGAGCGAGATGAATAAACCTAAGATTaagcatttctcttttttttttatcaaagatGGAAATACTGAAATTCAAGTGTAGGTTTGTCAATGTATGAGTAAGTATAACGTTTTATATTTCAGAGCATGAACCTAAAGAACAAGGCTAATGATGGTGACGTGATGCTTTTTATGCTGCTTTAGAGACAAAACTAGTGGAGTCCAGTAGAATCACAGCAGAACAAGATTGTTCCATTATTATCTGTACAATAACTCTTGTCTATCTACTCCAATACACTATATCCATATTGTGTTTGGAGGAAGATTGAGTTTTATTTTCCCAAGCAGTactacagtttattattatacaatactTAATACAAACTCTATACATGGACAGCATTttagtgaaaatatatattttgtaaataactCTCTAGAAACCATTTCTTGAACACTAAGTTTTACTACTCCAGAAagagatataaaaaatatgaatacacaaGAGTAAGACAAACTCTTTCTATGTTAAAGCATACAATATATGGCAATTTTATCTTAAAAAACACTAAGATACTTATAGGATTTTTCCATATACAGCTATATACTCTTacttaatacatttctttattttacagtatattttaaataaatctcacAGGATTGAGACTGAGCTCCACTGCTTATCTAACAAATATTGTTCAATTTctccatttcaaatgtattcctcTTTCTGTATCTAATCCCTATTGTAAAAATTACTGTTAAAAAGCGGATGtttggattttaaataaaatgcatttgcatgaaGTATATGATTCAGGTAAATGTAGGCATTTCCATGCAATTGAAAACAActaaatatgaaacaaataaataaaatagactgAAATCAATTATGAACAGTAGTAGAATACAATAACTTTTAAAAGaatagttaaatattaaaattttaCTTGAAAGTTTACATCAACATAATTCTGAAAAATGTTCCAGCTTTTTAAGCTTTGACTTGCAAATATTCTGTACTCTTGATCAAAAATGCAAGCCTAATTAAAAACAGCGGTCCTTTCTGAACAGAGAGAATTCCTAgtttacactttgttttcatataaacaATTACAGGCATTCAGTGTCATGCAGCATCCAAGTATTTTTAACAAGATAAAAACTGAATTGTAGAATTGTATTAAGtgattaaatgtaaacaatttcaaagactacattttaaatcaacaatTAAAAGACAATTATAATGTTCAACACTAAATAGTTTAGAACAGAACATACTCTGATGTGAAGTACAGTATAGATGGCATATGATGAAATCCAAATCAAATCTAGGAAAAAAATGTCATATTggtttataattattgttattcattaaAGAGAAATGGAAGTTTCTGGTTGATTTGGATGCACAGCCAAAGgcttagtttgttttttcttctgttgaacCAGTCTCTCCCTCACAGTGCTCAGTCTTAGGTTACAAACACCTAAGCATGGTCCTCATGGAAAACGTCCTGAACATCTTTGCTACCGATGGCTTCCATATTTGGATGCCCAGTCGATTCTCCCGTGCACTGGCTGAACTGGGGGAGCGCGGGCTAAAAGGCTGCCAGAGCTTTTCCCAGATGAGTTGAAGTTTGATCCTGGAATTTGGGATCTCGCAGCTTTGCTCCTCCATCCGTCgtaatctgaaaaagaaaggaaggcGCTTTGAAAACGTGGATCTGGTGTACATGTATGTCTACGAATAATGACAGAACGTGACGGATGGAAACATCACAGACCACTGCTGTTCTATGAGGAGTGAATTCTAAAAGCAAACCCAATATCCTACATATTTTAGTTCCTTATTTATTCTTCCTTTCTGAGATTGTGGGTGCtaagaataaatatattggcACTGTGCACCGTTAATCAATTTCTGACACTCCGCATCCCTTTGTAAATTATCTTGCAGTGTTCAATGTTCTCTACTGTCCAATAACGTatgcttgttttattatttttggcttAAACTCTTCCCCTGTTACCATCTAGGATGTGGAATAGATCATGGTTTGTATTAAActataaacatatacacatacactctgAAACCTGACCCAGAGAACTAATACTAAGTTTCTAGATTTAACCTATATAAAATGTCATGGTCGCTGTTTTCCACAATCCTGTTCCCACAAAAATGAGTAATAATTGAccttataatttaaataaataacctcaGAACtctcatatttatataatttgttgaTCAAGGATGGATTACtccctctttttttcccctcagtatACAGATGTCACGTTCTTTACATGTTgaacaaattaaagcaaaactacTGTACAGCACAGGTGTGTATCTGGTTACCAAAAGTGTTCATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44261 lncRNA downstream 11372 31407982 ~ 31410657 (-) True G35397
TU44140 lncRNA downstream 384692 31037124 ~ 31037337 (-) True G35304
TU44073 lncRNA downstream 747146 30592941 ~ 30674883 (-) True G35243
TU44022 lncRNA downstream 901565 30507070 ~ 30520464 (-) True G35214
TU43993 lncRNA downstream 979439 30412198 ~ 30442590 (-) True G35190
TU44323 lncRNA upstream 319086 31746625 ~ 31746866 (-) True G35448
TU44334 lncRNA upstream 644518 32072057 ~ 32072286 (-) True G35458
TU44347 lncRNA upstream 754485 32182024 ~ 32183570 (-) True G35471
TU44362 lncRNA upstream 857877 32285416 ~ 32285686 (-) True G35481
TU44365 lncRNA upstream 869314 32296853 ~ 32297284 (-) True G35484
AMCG00019592 mRNA downstream 81030 31316662 ~ 31340999 (-) True AMCG00019592
AMCG00019590 mRNA downstream 132278 31259809 ~ 31289751 (-) True AMCG00019590
AMCG00019585 mRNA downstream 343748 31072176 ~ 31078281 (-) True AMCG00019585
AMCG00019584 mRNA downstream 442083 30947707 ~ 30979946 (-) True AMCG00019584
AMCG00019583 mRNA downstream 502855 30908864 ~ 30919174 (-) True AMCG00019583
AMCG00019598 mRNA upstream 1782 31429321 ~ 31432563 (-) True AMCG00019598
AMCG00019596 mRNA upstream 28589 31456128 ~ 31467641 (-) True AMCG00019596
AMCG00019599 mRNA upstream 94025 31521564 ~ 31529426 (-) True AMCG00019599
AMCG00019608 mRNA upstream 818293 32245832 ~ 32246580 (-) True AMCG00019608
AMCG00019606 mRNA upstream 869938 32297477 ~ 32307436 (-) True AMCG00019606
TU43881 other downstream 1736727 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 1776066 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 1871867 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 1900045 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 8222421 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 794525 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 3083194 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 3627480 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 11116577 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 11216785 42644324 ~ 42656393 (-) True G36862

Expression Profile