RNA id: AMCG00019601


Basic Information

Item Value
RNA id AMCG00019601
length 1722
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00019601
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 31679378 ~ 31716557 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gCCCTGGCAATGCTTTCGGGCTCACTCCCCTGTGTGAACGCGCAGGACGCGCGCCCGACTGACCGCAGGCAGCGTCACTGTTACCTTGGTGACGTGGTCCAGCCAGGGGATCCAGTTTCAGCTCATCGGCTGCAGAGTAAGCGTGTGCAGGGACTGCTGTCTGGAAGTGGTAACTTTAAGTTTAATTCTGACGCCGTTGATACGAAGTTCCAGCAGAAGGCTCTGAAGCAACCTAAGCAGAAGAAATCCAAGTCGGCTGAATTTCTGATGGcagcagaagaagagagagcagcagcagaaggCATTGAAAACCCTGCTTTTAACATCAGCAGCACAGACCTTTCAGCTTATCAGGCTTCAGAAGAAAGAGAAATTCGACGTGACAGGCAGGATAGCACCCTTGCAGCTCACCAACGAAAAAATGGGCTGCGAGCCCATGCTAAACCAAGAGGAAATGAACGCACCCGAAATTACTTTGACCTACCGTTGGATGAGGAAATCAACCCAAGGCAGTGTGGTACGGAGGTCAGCGCAGAAGATGAGCTGGAATTAAAGATGGTGAGAGAGGATGCACAAGCATTCTATAAGAAGCTGTCAAAGATACTAGAAGACAATGACACTACAGTCATAGATTTACCAGGTGTGGTGATGCCAGAGGATGGGTGGGCCGGTCCATCGGCACAGGGAGGCGATGGAGGGCTTCCTGCTCGCTCAGGCCTGCGGCAGACGGTCGAGGATGAGGTGATCCCTTGTTATGTTGAGCAGTTGAAGGAATGTGTGCAGGCTGACATGATCGCGCTTGGCAGCCTTTCACTGGAACAGGAAGCACACTTAGTGATGCAGAAGGGGCTGTCACTGAGAACAGaacaagaaggaaagaaaagactAATAGCAGAAAGTCAGTTGCTGAAGgcagtgaaaaaacacaaaggtgAAGTGATCGCCAAGTATGGGGAACTGACTGAAGCCAAGACACAATCAAACAGGGAAGGAGGATTTTGGTGGCAGGTCGAGTGGACTAACACCCCACAGCCAGTTGAAATACAGCTAAGATGCCTCCGAGGTGTGAGAGACAAACTGCCTAAAGGACGCTACATGCTCAGTGTCTCCCTGTATAGCCGTCTGGGAGGATATGCACTTCGGTGGTCCCAAATCAAAGACCCCGTTTGGGCTGGAAAAACGTCCCCAGTGGAGCACAGTGGCAACTTATATAACACGGAGCTGCAGTTCATTCAGAGTGTCTTCACTATTTTACCTGCTTCGAGTGATGTCAAACCTGGGATGGTCCTCATGTTTGAGCTGTTTACTGTACCTGGAGAAAATACCCACGTCAGTGAGTTGATTGGCTGGGGTGTCTTCCCTATTTGCGACTGCCAGTTCGAGCCTGTGGAGGGAAAATTTAAAACCCCATTATTGAGAGGCCGCCCGGATCCCACCATCGATCAGTTCCGCAAAATAGAGGATCTCATTTCATCTGACCTGGACAATTGGTTGTGCAACCTTTACTTTCAGATAAAGAAGCTCCCCCGCTGCTATTCCAGGCAAAATGAATATGAGGTCACCCTTCAGATGCCTCCCCAGACTCGCCGGAGCTCAAACAGCTTGTATGCCCGCGAGGAGACTGCAAAGCACCAAAAAAGCTGTGACACCCAGGAGTCTCCTCTGAGGAGATCTCAGTTCAGCCTGTCTGATCACTCCAGGTGCTCTTCAGCGTCACTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44241 lncRNA upstream 276119 31399781 ~ 31403259 (+) True G35388
TU44049 lncRNA upstream 1110311 30567876 ~ 30569067 (+) True G35229
TU43966 lncRNA upstream 1499018 30172410 ~ 30180360 (+) True G35166
TU43858 lncRNA upstream 1995942 29635708 ~ 29683436 (+) True G35085
TU43797 lncRNA upstream 2523191 29152700 ~ 29156187 (+) True G35031
TU44322 lncRNA downstream 30070 31746627 ~ 31746876 (+) True G35447
TU44361 lncRNA downstream 568887 32285444 ~ 32285688 (+) True G35480
TU44366 lncRNA downstream 580847 32297404 ~ 32301342 (+) False G35485
TU44367 lncRNA downstream 580847 32297404 ~ 32306347 (+) True G35485
TU44372 lncRNA downstream 593480 32310037 ~ 32317571 (+) True AMCG00019605
AMCG00019600 mRNA upstream 115085 31553554 ~ 31564293 (+) True AMCG00019600
AMCG00019595 mRNA upstream 227200 31445639 ~ 31452178 (+) True AMCG00019595
AMCG00019594 mRNA upstream 255863 31413792 ~ 31423515 (+) True AMCG00019594
AMCG00019593 mRNA upstream 332288 31339427 ~ 31347090 (+) True AMCG00019593
AMCG00019591 mRNA upstream 367011 31289851 ~ 31312367 (+) True AMCG00019591
AMCG00019602 mRNA downstream 41528 31758085 ~ 31761946 (+) True AMCG00019602
AMCG00019603 mRNA downstream 357651 32074208 ~ 32086763 (+) True AMCG00019603
AMCG00019604 mRNA downstream 465522 32182079 ~ 32190986 (+) True AMCG00019604
AMCG00019605 mRNA downstream 593557 32310114 ~ 32316984 (+) False AMCG00019605
AMCG00019609 mRNA downstream 608069 32324626 ~ 32331064 (+) False AMCG00019609
TU43819 other upstream 2374732 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 7983577 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 9054173 22615623 ~ 22625205 (+) False AMCG00019475
TU42783 other upstream 11068489 20607474 ~ 20610889 (+) True G34170
TU44375 other downstream 607843 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 614080 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 3123759 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 4329933 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 4329933 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile