RNA id: AMCG00019614


Basic Information

Item Value
RNA id AMCG00019614
length 4393
RNA type mRNA
GC content 0.40
exon number 16
gene id AMCG00019614
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 33118132 ~ 33141895 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCAGTGCGCAGTGCAGCCGTGTGTCAGTCAGCGGCAGGACGCAGAGCTGTCGTCTGTGCTTCACCGTGCTTGTCGCATTTACAGCTGGTCCCAGATGGCAGCACCTTGTGTAACGAAAGTGGAACTGACCGTCTCCTGTGACAACCTGCTTGATAAGGATGTGGGCTCCAAGTCCGACCCCCTCTGCGTCCTGCTTTCGAACGCTTCCGATACACAGTGGTTTGAGGTGGGTCGCACCGAAAGAGTTAATAACTGCCTTCATCCAAAGTTTGCCAAGAAGTTCGACATCGATTATTACTTTGAGATTGTACAAAAACTGAAGTTTGCCATTTATGATATTGACAACAAAACTATTGACCTCAGCGATGACGATTTCCTGGGGGAACTGGAATGCACTTTGGGACAGATTGTGTCATGCAAGAAATTGACTCGACCGCTTGTTTTAAAGAATAAGAAGCCTGCAGGAAAAGGAACCATTACAATCTGTGCAGAGGAAGTAAAGGACAACCGGGTGGTAAATTTTGAGATGGAAGCTAGAAAACTGGATAACAAAGATTTCTTTGGAAAATCCGATCCCTATCTGGAGTTTTATAAGCAAACTGAGACTGGATGGCAGTTGGCGCACAGGACAGAGGTCATCAAAAACAACCTGAACCCTGTCtggaaaccatttaaaatccCTCTGCAGTCCCTTTGCAACGGTGACTTGGAGAAGCCAGTTAAGGTGGAGTGCTATGACTATGACAATGATGGATCCCATGATCTGATAGGCACCTTTGAGACAAATGTGGCTAGAATGCAGCAAGCTACACGCAGCTCCCCAGCTGAATTTGACTGTGTAAACagtaaaaagaaacagaaaaaaaagaactacAAGAACTCGGGAGTAGTGTGTGTGAAGTTTTGTGAGGTGGTGAAGGAGTTCACTTTCTTGGACTATATCATGGGGGGATgccaaattaattttattGTGGGAATAGATTTCACTGGGTCAAACGGAGACCCCCGCTCGCCAGAGTCCCTGCACTACATCAGCCCTCAGGGGTACAATGAGTACCTCACTGCCATTTGGTCAGTTGGGATGGTGATTCAAGATTATGACAGTGACAAAATGTTCCCAGCTTTTGGGTTTGGTGCCCAAATCCCACCTACATGGCAGGTATCCCATGAATTCCCTCTGAACTTCAATCCATCCAATCCATTCCTTGCAGGCATAGAGGGAATTGTGGAAGCCTACAGGATTTGTCTACCTCAGGTGAAGCTGTATGGGCCAACTAATTTTTCCCCCATCATAAACAATGTTGCGAGGTTTGCATCTCAGGCAGCCCAACAGAAAACTGCATCTCAATACTATGTGCTTCTCATCATCACCGACGGAGTGATAACAGACTTGGACCAGACCAGGGGTGCCATCGTGAGCGCCTCCCGGCTCCCCATGTCCATCATTATCATTGGCGTCGGGGGAGCAGACTTCTCCGCCATGGAGTTCCTGGACGGAGACAACGGTGTCCTCAGGGCCCCCACCGGCGAGACAGCGATCCGTGACATCGTACAGTTCGTCCCCTTCCGCCAGTTCCTTAACGCTCCAAAAGAAGCTCTGGCACAGAGTGTGTTGGCAGAAGTCCCCGGTCAGGTAGTGACCTACTTCAACATGATGAAACTCAGCCCGCCCAACGACTCCACTCCAGTTGCTAGCATCTGAGGGTGTGTATCTCTTATACATACTTGTGTACACGCCCACTGAAGACAAATGCTGCATTGAATGGAACAGCTCAtcttgcaaataaaatacactataaaataaaatatatcttaattaTCAGTATCCCTACAGAAATTGTTATAAAGCACATGCTATATCATTTTTCTTCCACACAGAAGTATTTAATCAATGTCATCATACATACACATCTTATCTTTTTACTTTACTCTTTCTCTATTTGGCAAATGATAATTCATTTTAAGGCCTGGAACAAATGTAAACTACCGCCTGCACACCAACTGCAgattaaaaactgtaatttgcATTCAATTAAAGGAGCAAATGTTGCCATAGAGGAGTGGAAGTGTGTTTTATGACCGGTGGGGTgaatcaaaattttgatttagtCCAAGCCTTAATCAATGATTTTGACTTCTCCtgcagttacattttattattattatttgctattttctatataaatattattaatttgttattgaaatgtaatacagaaaggAAATATCTTTCTTACCACCCTGGCTTAGCCATATGTTTACAgtttataatgcattaatgGTACACTAAGGTGCcattgccattttctttttactgagtcaaattattttatatatacaatctattttataaatatttgcttCACTAATTTGTTACGCATTAACAAGTTTATATACAAATGTCAGATATCATACCAGAATGCACTGATCATACCTAACATTCATACCTAATGTTCTTTGATTCtgttttaatgtacaaatgacacactagggctgggcggtataccgtaaaaaactatataccggtattcatttacggactggtttggacttttactataccttcatatcggtattttaaagttttctatgctaaattgaataatttattaattaccGTGTAATtcagtcatagcattcagctaccaataaactggaTCACGTTCCTGTATCCCACTTGCTGTGCTGGCTGCTTGAGACAGCActgtctgacatgagacgcatctgatcaaagaacGCTGATAGTGTTTGTGTAATGCAAATTTCAGCAGATCTgcactgctccaccaatgggatcggttggatcctgcagatctgAACAGAActgcaaatctgcgctacaagaacgcgaccacctttcttcacaaaccctgcagaaatcaatgtaattggttaatatattatttttatattagtttttattttaaaaaattgaattgccaatcatttaagtaacaacttaatAATTGTGCATTAtagatttacaaaaataattgatgtaattatttaataaagcatctagaattctatatctgtggttttgacaatgctgttcacagcttcattgtgtaatgaaagttgacattcgcctCTGCTAACAAGGGGGCAACaatagttttcattcagcttaacacATCCATCTTGATTTCTGAACAATCTTTTGcctcacagccacagctcacCTCCCGCAGCAGCGTTTCAGAGCTGCGCCGTGCTGTgtgattctgcacagatttctgtGGCTGGGGCTTAGTGGTGTCAAGCAGAAACACTCAAGAACGTGCATCTCTGAATCTCTGCACAGAACTGCTCTTCTCAGCGTGACCCTCATTTTGGAATGAATGTGCCAAATAAACTACATATGTATTTACGTGTTGACATCAACAGACGtgataaatgcacaatgaatgaagacgagatggaggagagcagtgtgggtaaaacttcacagcaaagtgaccccagtgaattTGTCCCGAAAAAAAGTGCGTcgttgatagtgtggacatgatttggtttcaagacaaatgacacagaacagggaaacgtTATTCAATGACagttgaattattatttttgctttacgaacagtataaaatggccattaaaaaatactgtcataccgtcaaaaatttgaaaaataccgtgatactgtattttggccatatcgcccagccctatgaCACAGAAACAATAAGTTtaggcccagaccaaatcaaaatggtCCGGGCCttagctggaaaaaaaacaaacctgtttaTTTGAAGACTGTGTTGATTAACAAATAGTGGCATTGTGTAAGTATATCCTTCCTTCAAATATTAATCTGTGCAAGAACTCAAACTgttcatttaatacatattcCTAATGTTTTTGGTATGTTAGCTTATGATGGAaagatacattcattttaaaagattttggcatttaaatatagtttaaaaacgattatttacatttttgtctatCTGTCTATGGAAAATACACTTAAGACCTCCTACAGGTAGCCATCTACAGTGAGTAACAACATATACACAAATTGCAGGGCAGGTTCAGGAAGCATTGCACTTACTCCTTcggtaacaaaaatgtaaaatgaatgtttttattacagatgttttagttttcttttgtaaacatcTCATGGCAAGTCAATGACAAGTCTCCCTGTATTGTGCATTCATAGAAACGTACtgaaaattgtttaaaaaaaaaaagaatcatcaTAGTTGTCTGTGTCAATGCTCTACTAATTGTTATGTAAACCAATGTATTGTTGACACATTTAAAGCAGTGCATTTATTAGTTTGGCCTTATAGCACAGTATATGTCTAATATGATAATGATTTATGTTATATATGAAATATCCTAAATAAACTGAACTTAATTAA

Function

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44478 lncRNA upstream 4753 33109000 ~ 33113379 (+) True G35578
TU44447 lncRNA upstream 142476 32975392 ~ 32975656 (+) True G35553
TU44419 lncRNA upstream 607183 32510681 ~ 32510949 (+) True G35527
TU44373 lncRNA upstream 797176 32319548 ~ 32320956 (+) True G35490
TU44372 lncRNA upstream 800561 32310037 ~ 32317571 (+) True AMCG00019605
TU44499 lncRNA downstream 242851 33384746 ~ 33385185 (+) True G35595
TU44549 lncRNA downstream 446488 33588383 ~ 33588587 (+) True G35636
TU44574 lncRNA downstream 537228 33679123 ~ 33724773 (+) True G35658
TU44608 lncRNA downstream 622826 33764721 ~ 33764947 (+) True G35689
TU44610 lncRNA downstream 645623 33787518 ~ 33787785 (+) True G35691
AMCG00019616 mRNA upstream 22931 33066122 ~ 33095201 (+) True AMCG00019616
AMCG00019615 mRNA upstream 74327 33034771 ~ 33043805 (+) True AMCG00019615
AMCG00019613 mRNA upstream 188940 32909002 ~ 32929192 (+) True AMCG00019613
AMCG00019609 mRNA upstream 787068 32324626 ~ 32331064 (+) False AMCG00019609
AMCG00019605 mRNA upstream 801148 32310114 ~ 32316984 (+) False AMCG00019605
AMCG00019619 mRNA downstream 531656 33673551 ~ 33694225 (+) True AMCG00019619
AMCG00019621 mRNA downstream 552407 33694302 ~ 33705462 (+) True AMCG00019621
AMCG00019620 mRNA downstream 602641 33744536 ~ 33746650 (+) True AMCG00019620
AMCG00019626 mRNA downstream 657652 33799547 ~ 33845086 (+) True AMCG00019626
AMCG00019627 mRNA downstream 912708 34054603 ~ 34063226 (+) True AMCG00019627
TU44379 other upstream 725156 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 790856 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 3813486 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 9422331 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 10492927 22615623 ~ 22625205 (+) False AMCG00019475
TU44804 other downstream 1698421 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 2904595 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 2904595 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 3150451 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 4372092 37513987 ~ 37516027 (+) True G36212

Expression Profile