RNA id: AMCG00019638


Basic Information

Item Value
RNA id AMCG00019638
length 3666
RNA type mRNA
GC content 0.49
exon number 30
gene id AMCG00019638
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34454209 ~ 34578440 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCAAGGATAGGAAGTGTGGAACCCACCCAGCCCTCTCCTGCCCGGCGAGCTCTCCCAGCCGCGCATGCGCAGCGCGGCGCTGACCGCAGGGCCAGGTCTCCATCTGCGCTCCGTGGCCTGCGCGGCTCAGACTGCAGCGCCGCGGTGCCGAGTGATGCGGGTCTCATGGAGCTGGATTTCAATAAGATGTTTGCGTGTTTTGAGATGATCATTTTCTTCCTCGCCTTCAACCTCTACGATTTCGCCCGGGCTCAGGCTGGTCCCAAGCCTGTGGTTAATTTCATCCCTGATGTCGTTGCTGAGATAAGtaagAAAATGTTGCACATGTCCTTAAGTAGCATGTCATGCCTTGACAAGATTCATCATGCTGTCATCATGCAGGAGATCTCTCACGATGTAGGGAAGCATGTGATCAGAAGTACAGATGCACGGCAGTGGATTAAGATGACCAGTTGGCTCTCTACTATAAAAAGTGAATCCCGTTTGAAACATCTACTACAGCGATTACCAAGCTATTGTCCAGAATCTATGAGTGACCTTTGGGTTTGCATCAACTCCACCTTACCTGGTGCATCCAAAAAATCTGAAGGCTGGGTTGGACTCGGCTGCTGTGAATTAGCAATTGATGTAGAGTGTCGACGGAAGTGTAAACTGGCATCCTCCAAGAATGATATTACAAAAGTATGCAAGAAGGAATTTGAGAATGCTCTCTACAGCTGTATCAGCAGAAATGAAATGGGATCTGTCTGTTGCAGCTATGCAGGCAGACATACAAACTGCAGAGAGTATTGCCAAGCGATTTTTCGCACAGACTCCTCACCTACACTCTCGCAAATTAAAGCTGTCGAAGATTACTGTCAAACCATCAGCCCTCAGTTAATAAGCTGTGTTGGAAACTACACAAAATCCTATCCCATTAAAAGCCCCATTGACAGCCTGTATTGCTGCGACAGAGCCGATGACACTCACTGCCAGACTGCCTGCAAGAACATCCTGAGGACAATGAAAACAGAACACGAGATCATAGACGGACTCATCAAGGAGTGTGATAGACAGCCCCTCCCCCAAGACCCACTCTGGCAGTGCTTTCTGGGAAGTTCTGGACCTGGGGGCAATGGTGAATCGATAGATACGTCTCCCTCCACCGGGCTGGATGGGGCAAAGCTGCATTGCTGTTACAAGGCGAATACGACAATCTGTAGAGAGCTGTGCTACACAGTCAGTACCAACTGGGGCAGTACGCAAAGCTGGCAGGAGTTTTATCAGCATTGTGAATACAATCCTATGGAGACGGCCATGGTCAACTGCTTGGCTGATGTCCGGGAGCCATGTCAGTTGGGCTGTAAAGATCTGGCATATTGTACTAACTTCAACAACAGACCAACAGAACTGTTCAGGAGTTGCAATGCTCAGTCCGACCAAGGGGCCATGAGCGATATCAAACTTTGGGAAAAGGGCAGCATCAAAATGCCCTTCATGAATATCCCAGTCCTGGACATCCGCAAGTGCCGCCCAGAAATGTGGAAGGCTGTAGCATGCTCTCTCCAAATCAAGCCATGTTACAGCAAATCTCGGGGAAGTGTAATCTGCAAATCAGACTGTGTGGAAATATTGACACACTGTGGAGACTTTAGTAAATTTCACGAGGGAATTAGTCCTGAATCTATCTGTGACCTTCTCTCACCTACAGATGACCCAGACCGTTGTATTCCTCTGGAAAGATACCTCAGCCCAAGTTCCCTAGGAAACATCATAGAGGAGGTCATTCACCCTTGTAACCCAAACCCTTGTCCCAGCAACCATCTGTGTGAGGTGAACAGAAAGGGATGCCAGTCAGGCCAGGAATGCCTACCTTACTTCTGTGTGCAAGGTATCTACAGTCGCCAATTCTCGTTTACACTGGGCATAATGGCTgtagatattacattaaaatggaaCTCAaGCTGTAAGCTGGGAGAGGCCTCGGAGTTCCTTGTCCACCTAGACGCTCTCATTCAGGTGCCTTCCTCTAAAGGCACAGTAGGGTGCTATGAAATATGCACCTGCGGACAAAGTGGACGTCTGGAGAACTGTGTGGAAATGACCTGTGTTGACATAGATAAAACGTGCGTCGTTGGAGGCCAAAGAAGAAGTCATGGGACATCCTTCAAAGTAGACTGCAATCCCTGTTCCTGCTATGCTGGAGAAATTGTCTGTTCTCGCCGCCAGTGTTTTAGCAAGCTGATCTCTGAGGAGGACAGACAGCGCTTTACAGGTCTACCATGTGGTTGTCCTGACCAgtttgtgccagtgtgtgcCAAGAATGGGCGCACATACCCAAGTGCCTGTGTGGCCCGCTGTATGGGCCTGACAGACAATCAGTTTGAGTATGGCACCTGTCGAGACAGTGACCCATGCTCGCCCAATCCCTGCCTTAAGAGTCAAAGgaatatattttattccataaacaaaatcatacagtgcatctggTTGTTACTTTCTTCTTTGGTTCACCAACCTGGAAAATCCTGTCCCAACTTTACTCGGAAAATTGTTGAAGCTTGCAATAAGGAGGCAGAGAAGATCGACTCGCTGATAAACTACGGGAGTCCCACGCTGGTGTCACACGTCCCCCTGTCGGCGTTCCTTACGTCTGAGGTGAAGGTGTCCACACTGACCTTCTCAGGGTGTGCCCCCACgttgtctctgtctttctcactGTTTTTGAGTCTTGTCCTCACTGTTTGGGTTAACCTAATCTGTAGCATGCCGGCACACAGAGGACAGCAGGCCCCtacaagcacaaacacacaactggTTCAGTTCCAGGGGATTCTGGGGAGATTTTATAAAGCAAGGAAAACTGTTCCTCAGGAGAAAAGCAATGCCGTGCTTGACAGAGAAACTATATTGCCATCCTTGAATGGATACTTCATCCCCATAGTCACCATTCTCTGTCCTGTcctctgtctcttcctctttGGGTATGGCATTGTCCTCTCCAAGGAGGACAGGACCACGGACAGCACCAGAAAGCAGCCTACAGAGTCAGGACCAGGGACAGCTCAGCAGCCACATCCACACTGCAGCAGAGTGGAGCCACCTGGCCCCAGGGACAATCAAtttgtgccagtgtgtgcCAAGAATGGGTGCACATATCCAAGTGCCTGTGTGGCCCGCTGTATGGGCCTGACAGACAATCAGTTTGAGTATGGCACCTGTCGAGACAGTGACCCATGCTCGCCCAATCCCTGCCTTAAGAGTCAAAGAATCTGTAGCATGCCGGCACACAGAGGACAGCAGGCCCCtacaagcacaaacacacaactggTTCAGTTCCAGGGGATTCTGGGAGATTTTATAttGGTGACTTCAAAGGTTTCCCTTGAAATCTGTAAGACCTCTGTAGAATTTGCAAAAATGGAAGTGTGTGGAAATGTGGAAGTCGAGACTGAAAATCTCTCTTTTCCCAATGGGGCATGTACAGCAGatgaggaagagaaaaacagcaggttaggagagaaaggaagaaagaaaaaagaaaaaatggccAGCAgaccagaaacaaagaaaaggaaaaggcacTTGATGTCATTAAGTGAAGCAAGTGAAGAAAATAGTGTTTACGATCCCTGCGCTGAGATTTCCATCAGGACTGTACTCGACTGTGTGAAAGTGCGTCAT

Function

GO: NA

KEGG:

id description
K17461 RECK, ST15; reversion-inducing-cysteine-rich protein with kazal motifs

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44633 lncRNA upstream 528840 33924845 ~ 33925369 (+) True G35709
TU44610 lncRNA upstream 666424 33787518 ~ 33787785 (+) True G35691
TU44608 lncRNA upstream 689262 33764721 ~ 33764947 (+) True G35689
TU44574 lncRNA upstream 729436 33679123 ~ 33724773 (+) True G35658
TU44549 lncRNA upstream 865622 33588383 ~ 33588587 (+) True G35636
TU44757 lncRNA downstream 42578 34596727 ~ 34596933 (+) True G35799
TU44770 lncRNA downstream 108920 34663069 ~ 34714039 (+) True G35812
TU44773 lncRNA downstream 132337 34686486 ~ 34719861 (+) True G35814
TU44776 lncRNA downstream 185740 34739889 ~ 34740119 (+) True G35816
TU44780 lncRNA downstream 255510 34809659 ~ 34810041 (+) True G35820
AMCG00019637 mRNA upstream 11405 34389213 ~ 34442804 (+) True AMCG00019637
AMCG00019636 mRNA upstream 145265 34218907 ~ 34308944 (+) True AMCG00019636
AMCG00019635 mRNA upstream 239666 34180782 ~ 34214543 (+) True AMCG00019635
AMCG00019632 mRNA upstream 353697 34093727 ~ 34100512 (+) True AMCG00019632
AMCG00019627 mRNA upstream 390983 34054603 ~ 34063226 (+) True AMCG00019627
AMCG00019639 mRNA downstream 74308 34628457 ~ 34650258 (+) True AMCG00019639
AMCG00019640 mRNA downstream 130898 34685047 ~ 34709923 (+) True AMCG00019640
AMCG00019641 mRNA downstream 290733 34844882 ~ 34846772 (+) False AMCG00019641
AMCG00019651 mRNA downstream 551977 35106126 ~ 35148291 (+) True AMCG00019651
AMCG00019653 mRNA downstream 797294 35351443 ~ 35374283 (+) True AMCG00019653
TU44379 other upstream 2061233 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 2126933 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 5149563 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 10758408 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 11829004 22615623 ~ 22625205 (+) False AMCG00019475
TU44804 other downstream 286167 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 1492341 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 1492341 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 1738197 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 2959838 37513987 ~ 37516027 (+) True G36212

Expression Profile