RNA id: TU44740


Basic Information

Item Value
RNA id TU44740
length 1312
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00019638
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34454209 ~ 34578440 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTATTCCATCCTCAAGTGTCCCTTTATTTGTATCATTCAGGTTGAAGCTTGCAATAAGGAGGCAGAGAAGATCGACTCGCTGATAAACTACGGGAGTCCCACGCTGGTGTCACACGTCCCCCTGTCGGCGTTCCTTACGTCTGAGGTGAAGGTGTCCACACTGACCTTCTCAGGGTGTGCCCCCACgttgtctctgtctttctcactGTTTTTGAGTCTTGTCCTCACTGTTTGGGTTAACCTGTAAGACTGCGAGACACTTGTGCCTGCAGAGAGTGTGAAGAACACAGTGTTGTGGGGTTTTTTGTATCCAGGGCGGGCTTTCAGCTCGTTTCACAAACTGTCAGGTTAccgagaaaggaaaaaaaaaaaaaaaaaaaaaaaaagcgaggTGCCCCTCCAAAAAGCGACGGAGCATTACCATCACTGTTATCAAGGCTTAAAACGTTGACCCGTGTAGAAAATgaaaacctatttttttttcatatgctTCACGGTGCACGTGCCGAGTTCCTGATAAACATTCAGGACTCTGTGACGGATATTCGTAAACATTCCCTTATGAAGTTGACCACAGTAAATTTTGCACAGTGATTTGGTAGTTTTCCCATGGCTTTTCCACACTATACTGAGGTTTTCAGCTGCTATACTGCAGTACATTTGTGAATAAGGGATGTAACACCATTGAAGAAGCAGAGAAATGATTAGCATAAGAAATAGCAAAGTCTCAAAGGCTTATTTTAGTATACACAGCTTTAGTATCtaggttttaaatatttcttattgTGAATAAGAAATACAGGGTTGATAAAATCAAACTGGAAAGCCAACACATAGCAAAGCATATCCTTCATAagctgaaagagaaaaagggaATAATTATGTTcctctgtatatattatatattttttgtgctcAAGTGaagaataatagccattttgaTAATGACAATCATTGCTTATCCACGTGTGGGTAATACGACAAGATGCCTTGCTTAAGATTTATACAGaattcatatataaaaatgcaataattttataatgttttgttttgttttattttggtttggagAATCAAAaactgtgtttgttgttttgatccTTGAGACAGGATAATCTTTTTAAAGGAgcaagttaaaaataatgtgccattacaaatgttattataCATGCATGATAACTAATTATGAAGTGTTTTATTCCAGAATGTATTGTAATTACTTTCacatatgtgttttgtttgtttgtttgtttcgtcctGTCTATATGCCAATGCTACCTGCCACATTAAGTATTTCCCTTGTTTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44633 lncRNA upstream 580689 33924845 ~ 33925369 (+) True G35709
TU44610 lncRNA upstream 718273 33787518 ~ 33787785 (+) True G35691
TU44608 lncRNA upstream 741111 33764721 ~ 33764947 (+) True G35689
TU44574 lncRNA upstream 781285 33679123 ~ 33724773 (+) True G35658
TU44549 lncRNA upstream 917471 33588383 ~ 33588587 (+) True G35636
TU44757 lncRNA downstream 18287 34596727 ~ 34596933 (+) True G35799
TU44770 lncRNA downstream 84629 34663069 ~ 34714039 (+) True G35812
TU44773 lncRNA downstream 108046 34686486 ~ 34719861 (+) True G35814
TU44776 lncRNA downstream 161449 34739889 ~ 34740119 (+) True G35816
TU44780 lncRNA downstream 231219 34809659 ~ 34810041 (+) True G35820
AMCG00019637 mRNA upstream 63254 34389213 ~ 34442804 (+) True AMCG00019637
AMCG00019636 mRNA upstream 197114 34218907 ~ 34308944 (+) True AMCG00019636
AMCG00019635 mRNA upstream 291515 34180782 ~ 34214543 (+) True AMCG00019635
AMCG00019632 mRNA upstream 405546 34093727 ~ 34100512 (+) True AMCG00019632
AMCG00019627 mRNA upstream 442832 34054603 ~ 34063226 (+) True AMCG00019627
AMCG00019639 mRNA downstream 50017 34628457 ~ 34650258 (+) True AMCG00019639
AMCG00019640 mRNA downstream 106607 34685047 ~ 34709923 (+) True AMCG00019640
AMCG00019641 mRNA downstream 266442 34844882 ~ 34846772 (+) False AMCG00019641
AMCG00019651 mRNA downstream 527686 35106126 ~ 35148291 (+) True AMCG00019651
AMCG00019653 mRNA downstream 773003 35351443 ~ 35374283 (+) True AMCG00019653
TU44379 other upstream 2113082 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 2178782 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 5201412 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 10810257 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 11880853 22615623 ~ 22625205 (+) False AMCG00019475
TU44804 other downstream 261876 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 1468050 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 1468050 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 1713906 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 2935547 37513987 ~ 37516027 (+) True G36212

Expression Profile