RNA id: TU44748


Basic Information

Item Value
RNA id TU44748
length 1430
RNA type TUCP
GC content 0.42
exon number 4
gene id AMCG00019645
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34510733 ~ 34522270 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTTGGCAGGAGTTTCAAAGAACCGCCATTGTGTCAGCAGTAATGTAAGCTATTTCATAAACAAAATCATACAATGTAACTGATTGCTATTTTCCTATTGAATTCGCTGGACAGACAAGTGGAAAATCCAGCCCTATTTGCCATGAGGAGAAAGCTTTGGCAAAGGCCCTTTAGAAGAGCTCTTTGCAAAACTGCGGTGTTAAGATTAAAGGGCCGTAGTCTTTCATCTTCAATGTACCTCGCTGCAAGTACTCCGTCTAAACTCTTCCACTGTTCAGGAATAGACTAAACATGTCAAGGCTTTCTGACGTTGCTGCGTTTGCTTTGCTACAATGGCAGATCAATGGAGCAGACAGGTGAAAACAAAGGGGTCACTTGGAGATCTTACTGAAATCCtactgaatacatttcacaatcatATTCAATCAGTTATTCCTAAGAAACTGTTACTCTGGGCAGATGGCATATCCATAGTTACCCTTCACAATGAAATGTATTCGGTGCataaaattcaatatttttcttcagtatgTAGTACAATCACCACTGACAGAAAAGATAGAAGCCAATATAGaaggtttgatttggtccagcccTTTGACTAGTGGGTTACCACTTTTTCAGGTTTGCTATGGCCACATAGCCagacaaaatagtgtttttaaaccaaataaagaatgtaagaaagaaaaagagagtaTCCTGCTGACATTCATATTTAGATGTCCCCAAGTGCCTGACATTAACCACAGTGAATCATTGTAGTTTGATGGAGaagtttacaataaaaatatactttcttggctacatttctttaaaataaactttatacattttcatacaggagtttattctgtttgcctaatcataattaataatgaacaaacttGAGATTATGGTTTACATGTACCTATTTTCCCTGTTTCAGATGTATACCAAAACGAAAAGTGTGCCTTACAAGCATCAGCAAATATCCCTGCAACCAATATGAATGTGTGAGCAGGCCTTCAAGCTGTGACAGGTCCCTGCTGGACCCTGTGTGTGACACGGAAAATAACGAGCATCGTAATCTCTGCATGCTATACCAAAGACAGAAAGTACTTGCATACACAGGCCACTGTCAGGAATCGTGTAAGTGCTCCAAACCCATCTGTGGCCACAATGGGGAGACCTACAGCACTGTGTGTGCAGCCTATTCGGACCGAGTGGCTGTGGACTACTATGGACGATGCCACGCTGTGGGCATAGTGTCTGAATACAGTTCGGAGTCGGGGTGTGCTTCCATCAGCTGTCCAACTCTCTCAACGAAGGGGTGCAACCCAGTGACTCCACCTGGGGCCTGCTGTCCTCTGTGTGCCGGCATGCTACAGATTCTGTGGACAAAAGACCAAATGAACGTCTTTGCTGAGATCAATCACAATCAGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44676 lncRNA downstream 447599 33996555 ~ 34063134 (-) False G35735
TU44677 lncRNA downstream 447599 34018101 ~ 34063134 (-) False G35735
TU44672 lncRNA downstream 447599 34060075 ~ 34063134 (-) True G35735
TU44609 lncRNA downstream 730278 33780221 ~ 33780455 (-) True G35690
TU44570 lncRNA downstream 840228 33670211 ~ 33670505 (-) True G35656
TU44761 lncRNA upstream 122865 34645135 ~ 34650231 (-) True G35803
TU44768 lncRNA upstream 128432 34650702 ~ 34650987 (-) True G35810
TU44973 lncRNA upstream 1412526 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 1532209 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 1645696 36167966 ~ 36168171 (-) True G36038
AMCG00019634 mRNA downstream 386115 34120362 ~ 34124618 (-) True AMCG00019634
AMCG00019633 mRNA downstream 395613 34090291 ~ 34115120 (-) True AMCG00019633
AMCG00019630 mRNA downstream 458245 34036361 ~ 34052488 (-) True AMCG00019630
AMCG00019631 mRNA downstream 475807 33931143 ~ 34034926 (-) True AMCG00019631
AMCG00019629 mRNA downstream 585780 33901289 ~ 33924953 (-) True AMCG00019629
AMCG00019642 mRNA upstream 40769 34563039 ~ 34565981 (-) True AMCG00019642
AMCG00019646 mRNA upstream 197401 34719671 ~ 34727267 (-) True AMCG00019646
AMCG00019644 mRNA upstream 300446 34822716 ~ 34832157 (-) True AMCG00019644
AMCG00019643 mRNA upstream 328718 34850988 ~ 34855000 (-) True AMCG00019643
AMCG00019648 mRNA upstream 370196 34892466 ~ 34937832 (-) True AMCG00019648
TU44357 other downstream 2277335 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 4825431 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 4864770 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 4960571 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 4988749 29517996 ~ 29521984 (-) True G35067
TU44832 other upstream 532749 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 8021846 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 8122054 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 8775961 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 9055039 43577309 ~ 43656444 (-) False AMCG00019768

Expression Profile