RNA id: AMCG00019646



Basic Information


Item Value
RNA id AMCG00019646
length 459
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00019646
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34719671 ~ 34727267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCCGCACGTGGAAACGATGGACAAAGCATGACCAGGAGAGGTCTTTCACCCCTTCTGTGTGGAGACCGAAGAGAGTGTGCCTCTGTATTGGAAATCAGCAGCTCTGTGCAATTAGGCTGGCGGTGGGTGGCAGCGAGAGGGATGCGGGGAGAAAGCTGTCACACAAGATGATGAAGGGAATTGACAGTGAGAAGTGTTCCCTGAAGGGAGCTGGACCGCAGACAGTGATTGACAGGAAGCATGCCATCCCAATGAGGACCCCTCACGGATCGCAGCCACCAGGTTTGCAGCACTACGGTGACCCGGGAGGATCCCTGATGAACCCCATGGCCTCATCCTTTCAAGTCCAGCCCAATTCTCCGCATCTCATCCCGCCGTACCCCCCTCCTCCATCCTACTGCAACCATCCGCCTCCCTCCTATGAGCAAGTGCTGAAATCCTTGGAGAAAAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44768 lncRNA downstream 68684 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 69440 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 141199 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 199540 34510733 ~ 34520131 (-) False AMCG00019645
TU44676 lncRNA downstream 656537 33996555 ~ 34063134 (-) False G35735
TU44973 lncRNA upstream 1207529 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 1327212 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 1440699 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 1672145 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 1810420 36537687 ~ 36537903 (-) True G36080
AMCG00019642 mRNA downstream 153690 34563039 ~ 34565981 (-) True AMCG00019642
AMCG00019645 mRNA downstream 205427 34512551 ~ 34514244 (-) False AMCG00019645
AMCG00019634 mRNA downstream 595053 34120362 ~ 34124618 (-) True AMCG00019634
AMCG00019633 mRNA downstream 604551 34090291 ~ 34115120 (-) True AMCG00019633
AMCG00019630 mRNA downstream 667183 34036361 ~ 34052488 (-) True AMCG00019630
AMCG00019644 mRNA upstream 95449 34822716 ~ 34832157 (-) True AMCG00019644
AMCG00019643 mRNA upstream 123721 34850988 ~ 34855000 (-) True AMCG00019643
AMCG00019648 mRNA upstream 165199 34892466 ~ 34937832 (-) True AMCG00019648
AMCG00019647 mRNA upstream 245543 34972810 ~ 34982687 (-) True AMCG00019647
AMCG00019649 mRNA upstream 339596 35066863 ~ 35081017 (-) True AMCG00019649
TU44748 other downstream 197401 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 2486273 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 5034369 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 5073708 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 5169509 29545231 ~ 29550162 (-) False AMCG00019556
TU44832 other upstream 327752 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 7816849 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 7917057 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 8570964 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 8850042 43577309 ~ 43656444 (-) False AMCG00019768

Expression Profile