RNA id: AMCG00019647


Basic Information

Item Value
RNA id AMCG00019647
length 528
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00019647
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34972810 ~ 34982687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTTGTACCAGAACAGGTTTCTAGGCCTGGCAGCGATGGCCTCCCCATCCCGGAGCTCCCAGAACAGGCGACGATGTAAAGAACCAATGCGCTACAGCTACAACCCGGAGCAGTTCCACAATGTCGACATTCGCAATGGTACTCATGAAGCCATCACCATCCCGAGGTCCAACAGCGACACAGACCTGGTTACCTCTGACAGCCGCTCAACGCTCATGGTCAGCAACTCGTTTTATGCCATCGGGCAGTCTCAGGACTTGGTCATATGCTGGGATATCAAGGAGGAAGTGGATGCTGGGGACTGGATTGGAATGTACCTTATAGatgagGTGCTTTCCGAGAATTTTCTGGACTATAAGAACCGAGGAGTCAACGGATCTCATAAGGGCCAGATTGTGTGGAAAATCGAAGCAAGCTCCTACTTTGTGGAACcTGAAACGAAAATCTGCTTTAAGTATTATCATGGAGTAAGCGGAGCTCTACGCGCCACAACCCCCAGCGTCACAGTGAAGAATCCTTCTGCCCCG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44768 lncRNA downstream 321823 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 322579 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 394338 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 452679 34510733 ~ 34520131 (-) False AMCG00019645
TU44672 lncRNA downstream 909676 34060075 ~ 34063134 (-) True G35735
TU44973 lncRNA upstream 952109 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 1071792 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 1185279 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 1416725 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 1555000 36537687 ~ 36537903 (-) True G36080
AMCG00019648 mRNA downstream 34978 34892466 ~ 34937832 (-) True AMCG00019648
AMCG00019643 mRNA downstream 117810 34850988 ~ 34855000 (-) True AMCG00019643
AMCG00019644 mRNA downstream 140653 34822716 ~ 34832157 (-) True AMCG00019644
AMCG00019646 mRNA downstream 245543 34719671 ~ 34727267 (-) True AMCG00019646
AMCG00019642 mRNA downstream 406829 34563039 ~ 34565981 (-) True AMCG00019642
AMCG00019649 mRNA upstream 84176 35066863 ~ 35081017 (-) True AMCG00019649
AMCG00019650 mRNA upstream 99626 35082313 ~ 35082740 (-) True AMCG00019650
AMCG00019652 mRNA upstream 165771 35148458 ~ 35162709 (-) True AMCG00019652
AMCG00019655 mRNA upstream 428805 35411492 ~ 35418455 (-) True AMCG00019655
AMCG00019656 mRNA upstream 495063 35477750 ~ 35542868 (-) True AMCG00019656
TU44748 other downstream 450540 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 2739412 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 5287508 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 5326847 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 5422648 29545231 ~ 29550162 (-) False AMCG00019556
TU44832 other upstream 72332 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 7561429 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 7661637 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 8315544 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 8594622 43577309 ~ 43656444 (-) False AMCG00019768

Expression Profile