RNA id: AMCG00019649


Basic Information

Item Value
RNA id AMCG00019649
length 801
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00019649
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35066863 ~ 35081017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAACCTGTTCGTCAGCGTGTACAGTCAGACCCAGAGCAGTGCAGAAGAAGGCATCTGGGCTTTGGAGCATGAGATGGATATGTATGAACGAGAAGCTACGCTACCCGCTGACGAAAACCCTCTCAGGTGGTGGCAAAAATCGTGTAGTATGTATCCACATATTGCGCAGCTGGCCAAGACATACTTGAGCATACGTGGCACATCGGTCAGAGCTGAGCGTGTGTTTTTATCAGCTGGAGACATTGTCAACAAAAAAAGCTCAGTGCTTGCTGCAGATCAAGTTGACCGTCTGGTTCAAAATGTCAGCCGAATTAAGTACTACATAAGTCAAAACCAGCTGCGCAAGGACCTTATAGAAGCCAATTTCTCGTCACGCCTACAGCACCGCGTGAAGGATGGTATACAATGGGACAGCGTGGCCCACCGGTGTGTCAGCTTCTTGCTGCTGGAGCACACTGCCGAGGCTTGGGGCGTGGTACTGCCCGACAGCCTCCTCCCCAACAGTGATCATGGGAAGGAGTCCAGGAGTAACAATGTATTCACTCCAGTTTCTAGCCCGGAGAAGTGGTGCCAAAGGAACATGGAAAAGGAATTTACTGgcaAGGGGGAGGAGCTGCCGTCCCCGTCCCCAGGGCCTCCCACAGCTGACCGGGAGGAGCTGGAGGTCCAACCCCCTGAaattgttggggggggggtgagggaCAGGTGTGTGCCCAGTTGCCCCGGCTGGAACCGTCTGAGTCCCCAGCGACAGGGGGAcgtcctgctgctgctgcctctgGGAGGGTGCACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44768 lncRNA downstream 415876 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 416632 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 488391 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 546732 34510733 ~ 34520131 (-) False AMCG00019645
TU44672 lncRNA downstream 1003729 34060075 ~ 34063134 (-) True G35735
TU44973 lncRNA upstream 853779 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 973462 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 1086949 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 1318395 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 1456670 36537687 ~ 36537903 (-) True G36080
AMCG00019647 mRNA downstream 84176 34972810 ~ 34982687 (-) True AMCG00019647
AMCG00019648 mRNA downstream 129031 34892466 ~ 34937832 (-) True AMCG00019648
AMCG00019643 mRNA downstream 211863 34850988 ~ 34855000 (-) True AMCG00019643
AMCG00019644 mRNA downstream 234706 34822716 ~ 34832157 (-) True AMCG00019644
AMCG00019646 mRNA downstream 339596 34719671 ~ 34727267 (-) True AMCG00019646
AMCG00019650 mRNA upstream 1296 35082313 ~ 35082740 (-) True AMCG00019650
AMCG00019652 mRNA upstream 67441 35148458 ~ 35162709 (-) True AMCG00019652
AMCG00019655 mRNA upstream 330475 35411492 ~ 35418455 (-) True AMCG00019655
AMCG00019656 mRNA upstream 396733 35477750 ~ 35542868 (-) True AMCG00019656
AMCG00019659 mRNA upstream 520355 35601372 ~ 35602677 (-) True AMCG00019659
TU44832 other downstream 11419 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 544593 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 2833465 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 5381561 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 5420900 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 7463099 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 7563307 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 8217214 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 8496292 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 9815482 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile