RNA id: AMCG00019656



Basic Information


Item Value
RNA id AMCG00019656
length 4539
RNA type mRNA
GC content 0.50
exon number 25
gene id AMCG00019656
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35477750 ~ 35542868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCGAGGCCCTGCACTGGCAGAGAGTTTCAGTGCGTCAGAGGCTCCTGCATCCCTGAGGACAGCGTGTGTGATTTCACTGACCAGTGTGGGGACAGCAGTGACGAGAATGACTGTAAGTACACCGGGGTCtcttctattgGGTTTGAGTTCATCCAAATAAACCTTCACTTTTTACACAGCTCGGCATATGAGAGATGTGACTTTGAGGGGGGTTACTGCAACATGTCACATAGCAAGATCTCACACACAACATGGACCAGAAGAACCGGTTTCACTAATATCGGACCCACTTACGACCATTTGGGGAACCGTACAGcTTATTACTTATCCATTTCCCAGCAAAATGGAGAGCAGCCTTTTGCAGGTCTAAGAAGTGTTGTTTTCCTTCCAACCAACTCCTGTCGGGTCACCTTTTACCAGTACTTCGGGCGTTTGAATGGGGCACTCAGTGTTGTATTGCAAACCCACTACGATGGGCCTTACACAGAAATATGGACTCATAACACACCCCAGAAAGAACAGTGGACCCGTACCTCTGTGACACTTAACAGCACTGAGAACTTTCAgGTGATGATCCAAGGACAGATCTTTAATGTCAGCGAACCCTCAGAAGCACTGGCCATTGACGACGTTTCATTCAGTGAAGGCTGTAGAACTGCTGTGGGATTTCAAACCTGCAACAGCGAATGTATTCCGGAGGTTAAATTTTGCAACTTTATTCATGACTGTCTTCCGGACAAGGCAGATGAAGATCGCTGTCGCCATTATCTTTGGATTGGAGCGAACAATGCTACATTGTCCAGGAGCAGCTTCCTTAACAGCTCAGTGTACCACTCTCCTGGACCGACTTGTGCCTTTCAGTTCCATTATAACATGAAAGGGAGTAATGCACTCGCCGTGTGGCTGAATACAACAGTGGTTTGTTTTGAAGGAACTGTTGTGGACATCGATGGATTCCTGGCTTTGGACGGTTTTCAGTTCTTTAACTGTGGCATCGCAGTGGACACTTCCATGCCATGCCTGCCAGCAATGGTTGCATGTGGAGACGGGACGTGTGTGCCCAGCTCTGCATTGTGCGACTACCACCTGGACTGCTGCGATGACTCGGATGAAGAGACAGAGCTTTGCTGTAGCTGGAATCTGACAATGCTGACTGGATCACGACACAAGGCCAATCCTCCAGCTGCCCAGAATGCCCTGACACAGACCACACTACCAGTACCCTCCATGGTCCGGTTTTGGTATCAGTTGACTGAGGGGGCAGCGATGTTCGTCTTCTCAAGGACTGTATTGGGTGGTGATTTAAGGAGGCTGGTTAGCATTACAGAACCCAACACCAAGACATGGAAGAAGGCAGAAATAGACATAGAACCTTCTACCATGGAAGTGAAAATCCCATTCCAGATTGTGCTTCTTACCAATGGCTCCCTCACTAATGAACATGGAATGACTGTCGACACAAATGGCAGAGTGTTTGTTGGAGAAATAGCCGACAGTGCTGCCTCAGTTTTCATCCTTTCTTCACCCGGTTTATATCAGAACATCACTGACACATACTCCCTGAGGTCCGCACTCAGCAACTCCCTCTATCTTTGCCATTCAATCATGGGGTCCAAGGATGGGGAGGCAGGAGTGTTTGTGGAACAGATTTCAGATAACAATGAAGACAGGATCCGGGCCTCTTTTTGGCTGACAGAAAGTGAATGGTTTCCTGGGTTTGCTGCGCTAGAGTCAGTCAGTCTTCCTGGTCACTATGTTCTCCATGCAGAGCAGAATGTCTCCCTGGCGAAGTATTATGGAACAAACATTTCCACCACAGTGCCACCCCCTCCTCAGTGCCTACCACCTTTATTTCACTGTCCCAGTGGGGAATGCATACCGGAAAACAAAGTGTGCGATTTCACAGTAGACTGCCCCAATGCAGAAGATGAATCTGGGTGTCCTGgaatgtgtgattttgaagaggACTCCTGTGGTTGGTTTGAGTTTGCCCCAGGAGATGGTTTTGATTGGATCAGGAGTTCCCGTGTGGCCGTGCCCCCGGACTACCAGGACCAATCCCCTCCACAGGACCACAGCAACAACACTGCTGAGGgtcattttatgtttgttctGAAAAACAGTAGCAGTATCTCACAGAAGGCCTTACTCAGAAGTCCCAAATACCGCCAGTCTGCTTCTGATCTAATGCCCCAGCACTGGTCTTTCAGGCATTACAATTATGGGGAGGCAGTCGGGGCCGCCGACATGTATTTGCGGATTGACGGTGTGGACAACATCACCGTGGTGTGGAGGACTTTGTACAACAAGGGCAGCCAATGGTTGAAGGAGGTCATTCAAGTTGGCCGACTGACGCAACCCTTCCAGTTCTCGCTGGCAAAGCTCAGCCTGGGCTTTTATGCCGGTGTGTCGGCCATGGATGACATCCTCTTCACAAACTGTTCCCTGCCGCCCCCCGCGGCTCACTGCAAGTCCCCCGATATGTTCCACTGCCGAGAAACCAGGGCCTGCATTGACAGGCTGCTGCTGTGCGACCTTGTGGATGACTGCGGAGACGGATCCGATGAAGAAAACTGCTCTATGGACCTGCAGTGCAACTTTGAGACAGACCTTTGCAACTGGTCTCAGGACACAAGCGATATATTTGACTGGACCCGAATCCAGGGCCCCACATCCACACTAAACACTGGTCCCTGGAAGGACCACACCCTGGGCAATGTGAACGGCCACTATCTCTTCATCGAGGCCTCGTTACCTCAGGAGTTTAAGGACACTGCAGTGCTGCTGAGTCGTAACTTCAGACCCACCACGCAGAATACCAGCAGGCAATGCGTCTTCCGCATCAATTACCACATGTTTGGCGAACACATCTACAAACTGGCTGTGTACAAGAGAACATCTACCAATAGCATAGGAGAGCTACTGTGGGAGCGATATGGGCCACAAGGAAACATGTGGCTAAGACAAGTAATACCTATTACTAGTTTCCTGCCTTTCCAGATTCTGGTGGAAGGCACTGTGGGCGACGATTTCAATGGAGATATTGCAATTGACGATTTGTCCTTCATGGACTGTGTTCCTTATGAAGgTGATTTGCCATCAACGGGCCTGACCACACCCTCAGGAACCCTAAATCCTTCAACCGAGTATCCCCACAGCTGTGCAGAGGGCGAATTTGTGTGCAGTGTGACCGGCGACTGCATCGACCTTGTGAAACGATGTGACTTTAGAGAGGATTGCTATGATAAAACAGATGAAGTAACCTGCGTGCGCCCGaagtgtgattttgaaggctcTAAGATGTATGGCTGGTATCAGAAGCCAGTGTCAAAATTAAGTATCAAAGATGAGTTTAAGTGGATCACTGCACAAGGCTTAACAATCCATCCTGGCGTCCCAAATCACAGACCGAAAACAGATCACACCTTAGGAACTCCTGAAGGCTGGTACTTGTATGCAGACAGTTCGAATGGACAGTTCGGTCAAAGCACTGATCTTCTGACACCTGTCATATCTCAGACTGGGCCAGAGTGCACATTAGTATTCTGGTACCATATGAACGGAGTAACAGTGGGAACGTTGCAGGTTTTCAGTATGTTTGGCAATGTGACTCATGAGCTGTGGTCTCAGAGTGGGAGCCAGGGGGACAGATGGAAAAGAGGAGAAGTGTTTTTAGGGATACGCTTCAATTTccagATTATCCTGAGGGCCAAGCGCGGTGTCAGTTACTTTGGAGATGTCGTGCTGGATGATGTCTCCTTTGAAAACTGTGCCCCTCTCCTGATTCCAGACAGGCCGTGTGAGACGGATGAATACGCATGTGCCAATGCATACTGTATCCCCGAAGACAACCTGTGTGACTTTAAGAATGACTGTGGGGATTCATCTGATGAGGATCCATATATCTGCAAAGCCTTCCACGGACGTTGTGATTTTGAGTTTGACCTGTGCTCTTGGCGCCAGTGGCAAGGAGATGATTTTGACTGGATTATAAAAGCTGGAAGTACCCCAACTCTTGGCACAGGCCCCTCCACAGACCACACACTGAGAGACCCTTCAGGCCACTACATCTACATGGAGGGCTCATTTCCCCAGGCCACGGGGGACTCCACTCGCATCTCCGGCCCAATGATCAGTAGGAGAAGCAAGAACTGTAAGGTTATCTTTTATCTGCACATGGCTGGAGGTGGTGCCGGTCAGCTGAATGTGTTCCAGGTCACGGCGTCGGACAAGTACCTGCTGCTTCTGAATCTCGCTGGAGACCAAGGAAACTACTGGCAAAGAAAGGCGATCCCTCTGCCTGCTGACGAAGACTTCAAGGTGATGTTTGAGGGGAAGGTCGGAGGAGGCAATCGAGGAGATATCGCTCTCGATGACATCACCTTCACGCGAGAATGCCTTCCCTCTTCATCTACTGGCCCTGTAGAACCAACATCTCTCCCTCCAACAGGTACAGatttacatatacacaacaGTACATGCCCTCTCTCTTCTGGGTACAATGACCCTGGACTGGATGAAACTGTTATTGAATTTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44768 lncRNA downstream 826763 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 827519 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 899278 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 957619 34510733 ~ 34520131 (-) False AMCG00019645
TU44672 lncRNA downstream 1414616 34060075 ~ 34063134 (-) True G35735
TU44973 lncRNA upstream 391928 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 511611 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 625098 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 856544 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 994819 36537687 ~ 36537903 (-) True G36080
AMCG00019655 mRNA downstream 59295 35411492 ~ 35418455 (-) True AMCG00019655
AMCG00019652 mRNA downstream 315041 35148458 ~ 35162709 (-) True AMCG00019652
AMCG00019650 mRNA downstream 395010 35082313 ~ 35082740 (-) True AMCG00019650
AMCG00019649 mRNA downstream 396733 35066863 ~ 35081017 (-) True AMCG00019649
AMCG00019647 mRNA downstream 495063 34972810 ~ 34982687 (-) True AMCG00019647
AMCG00019659 mRNA upstream 58504 35601372 ~ 35602677 (-) True AMCG00019659
AMCG00019658 mRNA upstream 60515 35603383 ~ 35603789 (-) True AMCG00019658
AMCG00019657 mRNA upstream 64779 35607647 ~ 35690658 (-) True AMCG00019657
AMCG00019654 mRNA upstream 153571 35696439 ~ 35714734 (-) True AMCG00019654
AMCG00019661 mRNA upstream 199999 35742867 ~ 35763241 (-) True AMCG00019661
TU44832 other downstream 422306 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 955480 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3244352 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 5792448 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 5831787 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 7001248 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 7101456 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7755363 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 8034441 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 9353631 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile