RNA id: AMCG00019661


Basic Information

Item Value
RNA id AMCG00019661
length 1776
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00019661
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35742867 ~ 35763241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAAACCAGTTGCATTCGCCGTACGCACAAATGTCAACTACAGCGCTGCTCAGGACGATGAAGTCCCTGTCCCCGGCATGGCTATTTCTTTTGAAGCAAAAGATTTCCTTCATGTCAAAGAGAAATTTAATAATGACTGGTGGATAGGGCGGCTGGTAAAAGAAGGCTGTGAAATAGGTTTCATTCCAAGTCCGGTCAAGCTGGAGAACATGAGAATACAGCACGAACAACGGGCGAAGCAAGGGAAATTCTCCTCCAGGTATGAAAGCCTTGTGCTCGCCACAAACAACCGGCTGCACCATAAATCCGGAGGAAACTCATCTACCAGTTTAGGTGAAGTAGTTCCTAGCTCAAGGAAGTCTACTCCTCCTTCCTCTGCTATTGATATAGATGCCACTGGTTTAGATCCAGAAGACAATGAGATTCCGGTCAACCATCGATCCCCTAAAGCCAGTCCAAACAGTGTCATGTCTCCCctatcaaaagaaaaaagaatgccTTTCTTTAAGAAGACTGAACATATTCCTCCATATGATGTAGTGCCTTCAATGCGACCTGTGGTTCTGGTGGGGCCTTCATTGAAGGGATATGAGGTGACAGATATGATGCAGAAAGCActgtttgactttttaaaacacagatttgaAGGGAGaatatcAATCACACGGGTCACAGCTGACATCTCACTTGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCACGCGATAATCGAGCGCTCCAACACAAGGTCCAGCTTAGCTGAAGTACAGAGTGAAATAGAACGAATATTTGAACTTGCAAGAACCTTACAGCTGGTGGTGCTGGATGCTGACACGATCAATCATCCGGCTCAGCTCGGAAAAACCTCCCTGGCTCCCATCATCGTCTATGTAAAGATCTCATCTCCAAAGGTTTTACAGAGGTTAATCAAATCCAGAGGGAAATCGCAGGCTAAGCACTTGAATGTCCAGATGGTAGCAGCTGACAAACTGGCCCAGTGCCCTCCGGAAATGTTCGACGTCATTCTGGACGAGAACCAGCTGGAGGATGCTTGTGAGCACATGGCAGACTACCTGGAGGCCTACTGGAAGGCCACGCACCCGGCCAGCTGCAATCCCCCCAATCCGCTCCTCGTTCGCACCCTGGCCACGGCCGCTCTCCCGTCCAGCCCCGCACCGGTCTCCAACCTGCAGGTACAGGTCCTCACCAAGCTGCGGTCTAACGGCTCCGGGGGCGAACAGAAGCCAGACAAAGCAGCGCCAGAGCGGACAGAGTCccgagaggaggaggaggaggaggaggaggaggaggaggaggagccgcCGCCACGGACGGAGCCGCCAAAGAAATCGCAGCACCGGTCTTCCTCGTCCAAAACAGAGCAtcacaaccaccaccaccaccaccaccaccaccaccacaaggGAGGCAAAGGGCTTTCCCGCCAAGAGACGCTGGACTCCGAGACGCAGGAGAGCAGGGACTCGGCCTACGTCGAGCCCAAGGAGGAGCTCGCGGAGGAGCAGAGCGACCAGTACGAGTCGCCCCGGGAGCACAACCAAAGGGACGAGCCGCACGCGGGCGGGGAGCACCGGCACCCGCGCCACCGCTCCAAGGAGAGGGATCGAGAGCAGGACCACAACGAGCGCAACAAGCAGCGCAGCCACCACAAGGCCCGGGACCACCACTACTACGAGAGGGACGGCGAGGTGGTCTCCAAGAAGCGCGGGGACGTGGGGGAGTGGAACAGGGACGTGTACATCCATCAGTGA

Function

GO: NA

KEGG:

id description
K04863 CACNB2; voltage-dependent calcium channel beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44768 lncRNA downstream 1091880 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 1092636 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 1164395 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 1222736 34510733 ~ 34520131 (-) False AMCG00019645
TU44672 lncRNA downstream 1679733 34060075 ~ 34063134 (-) True G35735
TU44973 lncRNA upstream 171555 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 291238 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 404725 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 636171 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 774446 36537687 ~ 36537903 (-) True G36080
AMCG00019654 mRNA downstream 28133 35696439 ~ 35714734 (-) True AMCG00019654
AMCG00019657 mRNA downstream 52209 35607647 ~ 35690658 (-) True AMCG00019657
AMCG00019658 mRNA downstream 139078 35603383 ~ 35603789 (-) True AMCG00019658
AMCG00019659 mRNA downstream 140190 35601372 ~ 35602677 (-) True AMCG00019659
AMCG00019656 mRNA downstream 199999 35477750 ~ 35542868 (-) True AMCG00019656
AMCG00019666 mRNA upstream 132613 35895854 ~ 35902777 (-) True AMCG00019666
AMCG00019664 mRNA upstream 149603 35912844 ~ 35926341 (-) True AMCG00019664
AMCG00019665 mRNA upstream 171559 35934800 ~ 35981536 (-) True AMCG00019665
AMCG00019663 mRNA upstream 236140 35999381 ~ 36014706 (-) True AMCG00019663
AMCG00019667 mRNA upstream 258115 36021356 ~ 36042117 (-) True AMCG00019667
TU44832 other downstream 687423 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 1220597 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3509469 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6057565 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6096904 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6780875 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6881083 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7534990 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7814068 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 9133258 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile