RNA id: AMCG00019663


Basic Information

Item Value
RNA id AMCG00019663
length 5068
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00019663
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35999381 ~ 36014706 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGTCCAGAACTCAGTCTAGCGTGTGGAAAATGCTGGTGACTACAAACAATGGTTAAAGGCCTGCGCTCCAAAGTAAAGGGATTTTTGCACTGATTGGACTGATTTTGAAGAATGGGGTCagggaagaaaattaaattcgCCCTGTTTGAAGTGTTGCAATTTGCGGCCCTGTGTGTTCCGGTTTTCATCATCATGCAAAGGTTCGCGTCCGTCGTGGAGCAGATCAAAAGCAATGCGGAAGCAAGAACTGCCTACTGGCTAATTGTGGCTTCATCTATTGCTTATGTCATGACAGTGACCCTGGTCATCTGGGTTCCCATGAAATATATGATCGTCAAGAAAAGGAAGTTcctcacagaaaacaaaaagtggAGACCAGTTACTCTGGCTTACGTGGTTCTGTCAACATTGCCTtgctttgcctttttaattgccaGCTCTGAGGTGCAAATAAACAGCAATGTAACATTGGACAGATTCACCGAACTCCCAGTCTCTCTGGTTTTATTCTCTCTGATATGTGTTGATATCATCGACAGGCTTCGCAAATGTCGTCTTACAGGACAGGTTCATGCCAACGAAAATGACCAGGATATCCATCTCCCCGGTCCAGTTTTGACCCATATGGAGCAAGTGGCGACTGTGTCGGGTCAGGTTGATGCTGACGGAGGTAATGGTGAGCCAAACACACGGCTTGAAGCTAACGGATCCGTGCCAGGAATGTTGGGAAACCAGGAAAGACAATACAGCATTTCTGGGATGAGTTCACGCACAACAAGCACTGTTTACCACAACTCGCCTAACGCCCCCTCCGGGCCCCTCAAGTTTCTATGCAACAATGACATGAGGGCAGAGTTATTTGTAGACAGTTTCATGTATTGGTTTGACACCATAGAGATGGTAAGGGTAGCTGGAGACCCTCAAGTTTATTATTCGGGCTGGGTTatcccaatatatatattcagctaTATCTCTCTGTTGCGGTTGGTTTTAAAACCCAAGAATCCAGCCCTGAGTTCATTAGGAGTTTTCCTACAAgacattccttttcttttcatccGAATAGCATTGATTGCCATTTTTGGATATGTTACTCCCCTGCTGTACCTTTTGAAAAACCTTTTGGTGtttttggcatttatttattttaactttatgaCCAAGCTGAAGATGTTTAATACTGAGCGAATGTTTTGAAGAGGCTTGTTCGGTCAATAAAGAAATATCAGAATTGAGAGCAGAAGGCAAAGATGTCTGCAGGCATCTCAAGCACACTAGAGCAGATCCTTCCTGCTGAGAGACTACAGCTGTATATACCGAAGAAGTTGCAGGCATTTTCCTCTTATTTTATTCCTTACTTTTTGCATTccattttatatgtttatatatgatcttttttatcatctttatatgattttatttgctTAGGATGAGTATTTGCTatgttaacaaaacaaagatctCTGGTAAAAAGCAGCTTCTGAAAAGACGTAAAGTCAACTGCAAGATGTAGTAGTAGATCAGCATtgcacagaacaaaacaaacttagTGAGTCCACTGTTGCACCTGCTCCTTCAGAAATGAAAAAGCTAGGGAATATTGTACCCCCATTtgtgtgataaaaaaaaaaaaatcaatttaacaTTCAATCAACTACTCACATTTCACTTGTTTCAAAGTTTCCCAACTATTTtgagaattaaatattttactgatgTGAGAAAGAAAGTAATGTCCTTTAATTGTTTCCAATTAAACTGCCTACAAATGGAGGATACCAGGGTACATGCACAGTATACAGTccttaagaaaatgtaagtaaattGCCCCTTATGTTGAGGTCTCCTGTACTTGTATTAATGGCACTTAGACGACCAAAGACAACAGAGTTTATCTTAAATAATATAGATTATAACGGGTCTCTTATCACTAATATTTAGCATGtattatatgatttaaaaaactgGAGAAACagactgtatttatatatttaaaaaatacagcaaaaagaTTACATTGACACTCCTGAAATGTAGTCGCATGTAGACTTTATAGAATTGTGCAATACATCAATACCCACAGAATAGCACAAAACCAAAatcagattttaatatttatcttttttgatCATTGCATTACAGGATATTTGTGAAAATTCACTTGCAGACAGAAAAGGCATGCTTAAATCTGAAGTGTTTTTGTCAAAACCTGTATACAGCAAGttctttattttagtaaaaGGCTAAAACTTATTAATTGCtctgtaataatttaaacatatgtGTTTgttccataaaaacaaaacacagttcaTATATAGAGATGGAGATCACAACCAAATtgtaactttttaaattttctcTCATCCCTGCTTCATCAGttctttttttgtacatttaataacattgtCTTAAAGTaagtgttgcattttgtttgaattgtatAGGTGGCAGCAATGGCCTTCTTAATGCACTGGGCTTGCTTTACctgtttcaaatggaaaataaataattaaacaggaaGCACCCGACAGTATTGTGATGGTATAGAAACATATTATGCAGGTTATCGTATTGAGGCACGTAATACATTATTGCACACTCACACGaaaatgtctgctttttctttattactGACAGACACTAACTGATTAACATAGCATTAAAATGCATGCTACATTCCTAGAGATCCgtttaaaattacacaaatcaatataaatgCAATGAGGTTGTACTTGCATACTTTTGAATAAATCCagctttcaaatcaaaatgtattttcatttatttttattttgaccaATCCttcaagacaaataaataaatctctttgTCTTTCATGCTTCCCCACTTAACTTAGAATACGAAATTctgtaaatatattcagaaaactTGAGGGCCAGATCTTATATTAatagtcttattttatttacccATTCAATTAAAGTGTGAATTAACCAAATAAAGTGAGGCAAGAGCCCCACTATGACCAAACCAGTCATGCCTGAACAGGTGTAGAAATTACAATAGCAATtcagaaaatactttaaaagggaaatattttgttattaacaGTAATGTCTGCACTTCCTGCACTACTAAGGAATATATGCTGAAAGGAGTTGCCCCACATTccttgcattgcattgcatgtgACAAGCAAGGAAAAAGATAACAGGAAAATGCAGATACTGGAGAAGTACCCCATGCTTTGTCTGGAATATTTTGGAAACATGTGAGTGTCTGggcaaagacaaataaaaataagcttttctaaattaaatactaaaacaataataacaaagtcagcaactattattattaatgtacatGTTCTAAGTTGATTTTGTCAGTAGTGCTGAGccttgtgaaatatatatattttttaattaaaaaagctaaTGATCAAACTTAAAACTATTACATGTTAAGGAGGTTGAATGTCACCaaaacctgcaaagaaaatatataaattggaTAGTCagtacttggtggaagcacctttggcagcaattgaCTGCTGTGTGTCTTTCTGGTTGTGtttctaccagctttgcacagtgAGATGGTTTAATTTGTACCATTTCATCCTCACAAAATTGCTCACGTTCTGACAAGTTCATTGGGGATCGTTGACGAACTGCATTGTTCAAGTCTCACCAAACGTTTTCTATTGCATTCTATTTGGACTTGGACTGGGCCACTCAAAGACATtaactttcttctttttaaaccattccagtctggctttgtCCTGCTGAAATAGTATTGATTCTTGGTTGACTCCAGCAGATTCTTTTCTAGGATTGTACCTGTACTTTGCACCATCAATTGCCCCTCAATCCTGACaggcttcccagtccctgctgatgagcaGCATCCCTGTAACCTAATGCTGTGTCCTTATGAGCTTATCTCCTTCTTGTTCTTAGATGGACtacttatacattttaaaattaccttCATTATATCAGGACATGAGACAGTGATTCTGAAACCATAGGCATTTAGTTGTTCACAAAGTAAATGATGAGGATTGATAGAAAGCATGCTATTTGCTGGCAATGATGTCAAGAGTCTTGACATCGTTGtaacatattatatttacagtttttgttgtCAAAGACTGAATCCTCATTGCTTTCAACCCTTATGTGCAGTGTTAGTTCATCACCCTTTGTGTTTCTCAACTAAAgcagaaaaaagcaaagcagtgAATATACCAGATTACAGGTTTAAATGTCTGTTGCCCAATGAATGAAACTGATATCCCCTGAAGAGTAATCTTCTATTGTATTTGCCAGATAAGGCAGCACATTACAGTGCTTGGTCCTGATTGTGTCCAAACTAACTCCTTTTCCTGGTATTTGACATAGAAGAGGATCATGCCAAACTGGATAACCCTGTGTAAAACTTGCAAGGCACTATAGTTTTATTGGTAAGGATCCACCTTCTCTTTACCTTCCAGGATCTCTATTGCATTCTAATTCCTGGACTTCCTTTGGCAGGATACAGGATTTCCTTTTCACGGTCTGCTCGCCCCTATATTTCCGTTCCCCTCTCACCAAGGTTCCTTTTGGTAACAGATTGTCGGCTGAACTTCAGAATCAGCACTATGTTGTGGTAGGAACTCCCCCTTTTGATTCCTCATAGCTGAACTGTACTGAATATAAACAAGGTCTTAAGGGGAatactgtaaagtgtttttcagaaacacattttcattatataattttgcCAAATGGTcatgtgtttatattgtgtattatcATTGTGTGTAAACAAGAGCATTGGAAGACTACATAGTGCTAGAAAATGATTTGATAAACAATTGTGTACTTTGAAGCTGGAATGCCTGTTCCCCAGTTTTCAAATCAAACTGGTGAAAGGTCAATTTCAAATCATAGTACTATTACTCAATATAACCTTCCAGTGAAGTGCTTAGCAGTTAAATATTCTTATTGTGTAGTCGGTCAACATCCTCTTCTGTTGGGAAATTTACCAAATGTTCTCTGGATATTgtggttttactatgtatagaTATTAAAGATCTGCTGAAATTGag

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44973 lncRNA downstream 64200 35934796 ~ 35935181 (-) False AMCG00019665
TU44768 lncRNA downstream 1348394 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 1349150 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 1420909 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 1479250 34510733 ~ 34520131 (-) False AMCG00019645
TU45001 lncRNA upstream 39773 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 153260 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 384706 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 522981 36537687 ~ 36537903 (-) True G36080
TU45088 lncRNA upstream 552223 36566929 ~ 36567264 (-) True G36082
AMCG00019665 mRNA downstream 17845 35934800 ~ 35981536 (-) True AMCG00019665
AMCG00019664 mRNA downstream 73040 35912844 ~ 35926341 (-) True AMCG00019664
AMCG00019666 mRNA downstream 96604 35895854 ~ 35902777 (-) True AMCG00019666
AMCG00019661 mRNA downstream 236140 35742867 ~ 35763241 (-) True AMCG00019661
AMCG00019654 mRNA downstream 284647 35696439 ~ 35714734 (-) True AMCG00019654
AMCG00019667 mRNA upstream 6650 36021356 ~ 36042117 (-) True AMCG00019667
AMCG00019668 mRNA upstream 54878 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019673 mRNA upstream 182192 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019672 mRNA upstream 202598 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019674 mRNA upstream 630661 36645367 ~ 36715736 (-) True AMCG00019674
TU44832 other downstream 943937 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 1477111 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3765983 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6314079 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6353418 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6529410 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6629618 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7283525 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7562603 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 8881793 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile