RNA id: AMCG00019665


Basic Information

Item Value
RNA id AMCG00019665
length 6942
RNA type mRNA
GC content 0.39
exon number 28
gene id AMCG00019665
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35934796 ~ 35981536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAGGCGAGGGCAAAGATAGCCGCTCATTCCTGATATACAATGAAGATCACAAAAAATGTGTGACTACAGACAGTGCCAGTTCTCTGGAGAGCACCACATGTGACCCCAATGATGTGTCCCAGGAGTTCCGCTGGGTGTCCAGCAACCGACTGCTGAGCATCTCCCTGAAGCTGTGTCTCGGGGCGATAAGTAAGAGCGACTGGGTGAAGATACTGCCAGTGCCCTGCGATGAGAATAGTGAACTGCAGAAATGGGAATGCAAAAACGATACCCTTTTTTCCCTAAAGGGAgaagccttttattttaattatggtaACAAGAATGAGAAGAACATCATGTTATACAAAGGATCAGGAATATGGAGCAGGTGGAAAATCTACGGCACTAAAGATGATCTGTGCTCCCGAGGATATGAAGaTGTTTTTACAATTGGAGGCAATTCCAATGGATTACCATGTCAGTTCCCTTTCAAGTTTGAAGGCAAGTGGTATGCTGAATGCACTTTGGATGGCAGGTCTGATGGCCAGATTTGGTGTGCAACATCAACTGATTACACCAAAGATAAGAAATGGGGCTTGTGTCCAACAAAATCAACGTCTGGCTGGGATACCCATCCTGTGACTGGCATTCTCTACCAGAAGAACATTCAGTCAGTGTTGACCTGGCACCAAGCACGGAAGAGCTGCCAGCAACAGGAGGCAGACTTACTGAGTATTGTTGAACTACACGAGCAAACCTACCTCTCAGgaCACCCAGTTTCAGAGCCTGGACTCAACTGTGCTGTTTTAAATCCGGGAAAGGCGGCAAAATGGGAAGACAAAGAGTGTTCAAAGAAACTTGGGTATATCTGCAAGAAAGGAAACGCGACGAATATTACCCCTGTGATTCCAGTGAAGGATCAGCCAAGCTATTGCCAGAATCACTGGGTACCATATGCTGGCCATTGCTATTACTTGGAACGAAGCAAAAAAATATGGAAAGAGGCTTTGTCTGCGTGCCATAAAGAAGGAGGAGATCTTGCGAGCATACATAACATTGAGGAACACAGCTTTGTTATTTCACAACTGGGATACATGTCATCTGATGAGCTCTGGATAGGACTGAATGACCAGAAGATGTCGATGCTGTTTGAATGGAGTGACAGATCTCATGTAACATTTACCAAATGGAAAACGGGGGAACCAAGCCATGCCATCAGCCTGCAGGAGGACTGTGTGCTCATGAAAGGAGAGGAAGGGAAATGGGCAGATCATGTCTGTGAAAAGCCGTACGGATACATTTGTAAGAAAAAGGCCTCAACCCACCCACAAGGTTCACCTGAAGTCGTGAGTCCAGGCTGTACAAGAGGTTGGATCAGAAATGGCGTATACTGCTACTATGTTGGATCTGAGACGCAGACATTTGACAGTGCAAAGGACAAGTGTGGCAGTTCAGGGAGCAGTTTGATTGATATTCAGGACAGATATGAAAATGCATTCCTTGTTAGTCTGGTTGGACTGCGGCCTGAGAAATATTTCTGGATAGGCCTGTCCAACACCGTGGATCGCTTATCATTTGTATGGACCAATTCTTCAAAAGTGTATTTCACTCACTTCAATTCCGGGATGCCAGGCAGAAAACAGGGTTGTGTTGCCATGACAACAGGGACAAATGCTGGATTATGGGATGTTTTAACCTGTGACAGCAAAGAAAAGTATATCTGCAAGCAGCTGGCTGTTGGAGTGACAGTACCCCCACCTCCTACAACACCTACACCGGCTTCTTGTCCTGACGATTGGCAATCGTATGGCCAGGGCCAATATTGTGCCAGGCtgtataagaaaaatacaaagaacaaaaaaacctgGTTTGAAGCTCGTGATTTCTGTGTGGCAATAGGTGGTGATCTGCTAAGTATTCACAGTGATGATGAACTTCATGACATATATCGTGACCTGACTCATTACTACAATGAAAATGCCTGGATTGGTATCAACAACCTGGATCCCAATGCTGGATACGTGTGGAGTGATGGATCTCCGGAGTCACACCAAAACCTCCCCCCACTTTTACTCCATCAACCTAATGTCACAGAAGATGGCTGGTTGTCTAATGGcaaatatcaatattatattaatactcAAAAACTTTCTATGGAGGATGCTAGAAACTACTGTAAGAAGAATTTTGGTGACCTTGTTGTCATAGAAGATCAAAGTGAAAGGTTGTTTTTATGGAAACAGATTTCCAGAGGTGATGAAGACCAATATTACATTGCATTGACTGTTGGTCTTGATAAAACATTCCAGTGGCTAGATGGATCACCTGTAACTTACGTGGCATGGGAAAATAATGAGCCAAACTTTGCCAACAATGATGAAAACTGTGTCACCATGTATAAAAGTATGGGGTTCTGGAATGACATAAACTGCGGGATGACTTTTGCTTCTATATGTAAAAGAAGTACAGAGTTTGTGAACACCACAATAGCGCCAACAGTTGTGCCAGAAGGAGGTTGCCCCCCTGACTGGATGCTTTTTGACAAAAAGTGCTTCAAGATTATTGGTAAGGATGTTTCGGACAGAAAGGGGTGGCAGGCTGCAAGAAGCTACTGCATAGAGTTGGGTGGAAATTTAGTTTCCATACTTAATGAGAGACAGCAAGCGTTTCTGACCACTAAGCTTCTGGACATGCCAGTGGATGCATGGATAGGGTTGAATGACATCAACAGAGAAATGCGCTTCCTCTGGACTGATGGGAAAGCAGTCTCTTACACCAACTGGGCAAAGGGTAACCCGGTGTCCATGCCTGATGGAAGATACCTCTACATAGATGAGGAATATGACTGTACGTTGATGGCAACCACTGCCAGCATTGCTGGACAGTGGAAGGTGGAGGAATGTTCTTCAAATAGGTCTTTCATTTGCCAGAGAAAGATCGATCCTATGATTACTAATCCAGCAACAACTGTATCACCAAGAGATTTTGTCAAGTTTGGTAATAACTcctataaaattataaatcagaAACTGAATTGGGATGAGGCCAGAAGGCAATGCAAAGCAGATGACGCAGATCTGGCCAGTGTTTTGGATTCTATAAATCAGGCCTACATTTCACttcagacacatacatacaaagagCCCATGTGGATCGGATTGAACAGTAACGTGACCTCAGCATATTTCACGTGGATTGATAACTGGAAGATGCGTTTTACTAAGTGGGCTGCAGGAGAACCAAAGAATAACATTGCTTGTGTTTACATTGACGTTGATGGGACATGGAAGACCGCACCCTGTACTAACACCTACTACTCTGTGTGCAAAAATTCAAAAGATATTGCTCCAACTGATCCACCTCAGCTTCCCGGTGTTTGTCCTGAATCGAAAAAGAAGCGAGTGTGGGTGCCATTCCGGGGGCACTGCTACAGCTTCCAGTCCACTGCGTTCGACAGCTGGCCCCACGCCTCCATGGAGTGTCTGAGACTAGGTGCTTCCCTTCTGAGCATTGAGGATCCTTTGGAATCTGCATTTATTCAGCACAACACTGACCTGCTGCAAGACCGTGCCAAGTCTTTCTGGATAGGATTCTACAAGAACGTGAATGggCAATGGCTTTGGTTAGACAACAGTGTGGTGGATTACACAAACTGGAACAGTGGGGAACCGTCAGAACACAACGAGGAATGTGTTGAAATATACTCTGACACTGGGAAGTGGAACAATATCAACTGCAATTCATATAAACCCTATATCTGCAAAACAGCAAAAGTTATTCCACCTACTGAAAAAACTCCAAATCACCAGCCTGtGATTAACAATGAAAAACCTGCTCATGGCTATGCTGGAATTGTGATTGCTGTATTAATTCTCATCCTAACCGGAAGCGGACTGGCTGCCTTCTTCATGTACAAGAGAAGGCGTACGCTTATCCCAGATGGGTCCAACTTTGATAACTCTCTATATTTTAACCCAGATACCTCTCATTCCAGTCTTGACACCAAAGTCCTGGTAGCTAACATTGAGCAGAATGAACAGGCTACAATCTAATTATATgtgcagtaaaacaataaaaaataattaaaaaagtattaaccTTTCTCCTGGTTGAAGACTGGTTTTAAAATCTACATACATTTGACACACAGCTTCCAGATTGTGATTCAGTGTCTTCTTCTCTGACCCAGATGTAAGCCGTGAAATATAAGTCCATTCTCAGTCCAACAGTGTGTTAGAAGTTCAATATTAATCCCCTTTGAGTATGGGTATGGTGTTTTTAGAATTACCATCCAAGATGTTCTGGAGGGAAAACACCATTAACACAGCAGCCGCACTCAGGGAAAATGAGGCGACTCCATTTTCCATGGAGACattcactttcaaataaaaaattgacACGTTTTCTGTCCAAAAATGTATCGGCACATTTTCCCAGCTAGCTATATACACGAGATTGTTAAATAATGATATAAGGGTTGTTATATCAGTACTGTTTTGCACTGTAATTAAATTCTGAACCCTATGCagttaatcaaatatataacatatttcaaatttagattttattgCCAGTGTTGTTAGTGTTAACTGCACCACAATCATTACTTTCCAAACAGCAAAACTCTCAACAGCCATGAGAATACGTTTGCATGTGCTTCATTACAATATCATTGTTCTCCCAATGAATGTGCTCAGTGTCGATGGTATGTTGACAGTCACTCAGGCATTTCTTTCATTCACAACTTAGTTTAGTTCTTAGTGCCTCTTGACCTTTTCACAATGTTCCATCTTGCCTGACATTGTTTTCCCTTCATAGACATTTTGGATGTGCAAACATTGTGTTGGATTGTAAATAGAGattatcatacatttttacaagCAGGTGAATGTGCAGGTGGTTTCAACTGGCTTCCACAACAACTCTGCTGTAAACACCCCTCagtaatttttaaatcaaactttgcTTCCTGTTGTGTGTAAGTAAATGCAAACTGTTTAAATTTACAGAAGAATAACtaaattcatatgtttttttggccatcttttgtgtatatttccttaaactgatacaaaatatcaaaagtAAGCCTGGATATGTAGTGCACATACTAGAGATGTATTTATTCCccatcatctcaattagtcatttGGTCCTGTTGGAAAGAATTTCTTGGTACAGGAGTTTCAGTCAATCagctttatttttgaatgaattTGCAGTGATACAGAAGCAAAAGCTGCCAATAATACACTCAAAGTTTTGTATAGTATTGAATGTATGGGTAGGTTTCACAGCTTACATCTTATACTAGAAACATGTATCTTGTCCCAAGATATAGAAGTAGCTCAGTACATGGTTTCAAGGTCTTGTTCCTACCAAATACAGTGGCATCTCAGTTTAACTTGGCAGTACCAAATGCTCACAAGATAATGAACATTAGGACAGTATTATCCTTGCACATAAGCAGAATTAATctcacacacagaataaaagcaATGATTATATGTATTCAGAAAAGCATCGACCATCTTAAAAGCAATGGtatacatattaaagaaaagcaaaattctaaaaaaaataatggccTATGGGATACCAGTATAATGGTTCAATTTGATCCTGTCAGTTTCATTAATTGAAGTGtgtgaatacatttcagatttacGTCATATGTAGTTATGATGCAATATTAGACTTCAACATAAATAATCtaatcttaaaaaatgtaaatgggatATTACACTGCATGTAGATGTTTCAGAACGGTGGAATGgtaattaatgaaaatcatattttattaaatgagaTCTGGGAAGGCTGAGAACTTACAAAGTAGATGATTGTGATCAGGAGAGAAGATGTAGGGCCCACATGAAGGAATTTGCACATGAATGGTGCATATGATGTTGCCATTTCACTCATCTCATTAAAAGGAAACGGAATTTGTCCCAGTAAGTTAATGAGCTTGTAAACCTTCTAAATTTAAGTTATATTAATTGAGGTgacaaaagtgtatttattattattattattattattattattattattattattattattattattattatttcttggcagactacCCAGAGATAtagcataaatacattttattcatagaTGTACGCACTATTACAACTTCCATTTGTTTGGCAGAGGTTGAAAGTACTGATTGAGGCAAAGTCAccagcaaaaacaaagaaaaaactggAACAAAAGTAGGAAAGACATACCTTGATACTATACCAAAGTGGCTAGAACATTTTGGGAGGtaattaagaattaaataaatacaatatacagttatagatccttttgtttaaaatggaaacaatatattaattatcctataaaatcattaattaaaatcaggACCCACAGAGTTCACTGATTACCGtacccaaaacattttaattatttttaagtctaCATGCTGAAAGGTAACCacataattatgtaaatattatggACAAGATAGCAGtaactcaatatatatatatatatatatatatatatatatatatatatattatttttttttattttttttgggaTATCTGTgtgtaagaagaaaaaaaagatgtacaACTTATTTTCAATGTTCCTTTAATACATCAGTTGTTGAATATGTTCTAGTTTACtgtaataaatcattaatagtTGACCAAGTTAATTCACTCTGATTTTAAGCGTAAGTCTGATTTCTAgagagaacaaaacacaaaacgaAAACATAAACAATCGCTTTTGCCAGTTTCATACTGCATCACTGGAGAATCCAGTTCACAGCTGcttgaaaatgtgttgatgAATGATAACATTCTCTTCTGTGAAACCtcagtctttttaaatgtcttctttttttgtgtaaattgtaTGATGGCTcaaattcaatgtatttgttgaCTTTCTGTACTTGTTGGTTTATATGTCATTAAATTCCTAAGTTACAG

Function

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44768 lncRNA downstream 1283813 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 1284569 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 1356328 34506033 ~ 34578472 (-) True G35792
TU44749 lncRNA downstream 1414669 34510733 ~ 34520131 (-) False AMCG00019645
TU44672 lncRNA downstream 1871666 34060075 ~ 34063134 (-) True G35735
TU45001 lncRNA upstream 72943 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 186430 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 417876 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 556151 36537687 ~ 36537903 (-) True G36080
TU45088 lncRNA upstream 585393 36566929 ~ 36567264 (-) True G36082
AMCG00019664 mRNA downstream 8459 35912844 ~ 35926341 (-) True AMCG00019664
AMCG00019666 mRNA downstream 32023 35895854 ~ 35902777 (-) True AMCG00019666
AMCG00019661 mRNA downstream 171559 35742867 ~ 35763241 (-) True AMCG00019661
AMCG00019654 mRNA downstream 220066 35696439 ~ 35714734 (-) True AMCG00019654
AMCG00019657 mRNA downstream 244142 35607647 ~ 35690658 (-) True AMCG00019657
AMCG00019663 mRNA upstream 17845 35999381 ~ 36014706 (-) True AMCG00019663
AMCG00019667 mRNA upstream 39820 36021356 ~ 36042117 (-) True AMCG00019667
AMCG00019668 mRNA upstream 88048 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019673 mRNA upstream 215362 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019672 mRNA upstream 235768 36217304 ~ 36240381 (-) True AMCG00019672
TU44832 other downstream 879356 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 1412530 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3701402 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6249498 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6288837 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6562580 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6662788 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7316695 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7595773 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 8914963 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile