RNA id: AMCG00019667


Basic Information

Item Value
RNA id AMCG00019667
length 1709
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00019667
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36021356 ~ 36042117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACAATGCCTTAgtcgccgccgccgccgccgctgctgctgctgcaggagtgTCTGTGACTCGATATTGAGATTGTGTCTGGacttgtctgtttttatttatttatgtatgtatgtatgttcttatttatttactaatcgCTGCCAACAGAAACAAGCGAAGAAAGATCAAAAAGGGAAGAGACTGTGGTTTTAAATTTTGCGATGCCTCTCTTTACATCTAATCCATTCGACCAAGATGTGGAGAAAGCAACCAGTGAGATGAACACTGCCGAGGACTGGGGCCTTATATTGGATATCTGCGATAAAGTAGGACAGTCACGCACAGGGCCCAAAGAATGCCTCCGGTCTATAATGAGAAGAGTGAACCACAAGGATCCTCATGTGGCTATGCAAGCACTTACACTTCTTGGAGCATGTGTATCAAATTGTGGCAAAATCTTTCACCTAGAAGTTTGCTCAAGAGATTTTGCTAGTGAAGTCAGCAATGTCTTAAATAAGGGTCACCCCAAAGTCTGCGAGAAGTTGAAAGCTCTAATGGTGGAATGGGCTGAGGAGTTCCGGAATGACCCCCAGTTGAGTCTCATTTCGGCCATGATCAAGAATCTCAAAGAGCAGGGAGTGTCGTTTCCTGCTGCTGGCTCTCAGgCAGCAGAACAAGCTAAAGCAAGCCCTGCTTTAGTAGCTAAAGACCCCACCAACACTACAAATAAAAAGGAGGAAGAAGACTTGGCTAAAGCTATAGAGTTGTCATTAAAAGAACAAAGGCAACCGCAGCCGGCGCTCTCCAGTCTGTACCCCAGTGCCTCCAGCCTGGTAATGAACCATAAATCAGAGGGAAGGAAAGTGCGAGCCATCTACGACTTTGAAGCTGCAGAAGATAATGAACTGACATTTAAGTCAGGGGAAATCATCACAGTCCTGGATGACAGtgatcCCAACTGGTGGAAGGGAGAAACATATCAAGGAGTCGGCTTATTCCCTTCCAATTTCGTGACTGCAGACCTGACTGCCGAGCCTGAAATGAtcaaaacagagaagaaaactgTGCAGTTCAGCGACGAAGTTCAAGTGGAAACTATAGAACCTGAACCGGAGCCGGTTTATATCGATGAGgAAAGAATTGACCAATTGCTACAGATGATTCAAAGTGTGGACCCTTCAGACAATCAGAAAGACTCAACAGAACTGCTGCACCTGGAAGGTGCCTGCAATCAAATGGGACCTCTTATTGATCAGAAACTTGAAGATATTGACAgGAAGCACTCAGAATTGTCAGAGCTGAACGTAAAGGTGATGGAGGCCCTCTCACTGTATGCCAAGCTGATGAATGAAGATCCAATGTATGCCATGTATGCAAAACTACAGAGTCAGCAGTACTATGTGCAACAGCCTCCCTCAGGCAATCAGcagGTGTACCCCGGCCCAACGCAGAGTGGCACATACGCAGTGACTGGCAGTGGTGTCATGGGCACGCACCATTGTGAATTCGACTCCGGGAAATGCGTACATGAACCAGCCGCCTGTGTACAGCCCTCTGCAGCACGCTGCGGTGGCACCGGGCACGGACATGACCTACCAGAACACTGCCACAAATGTATCCCAGATGCCAAGCTACACCATTGCCTCTCAAAGTACGGGGGTCTCCTGTCACTGTATTTCACCATCTTGAAAATTCAGGAAACGTTGGACATCATTTTTATTGACGAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44973 lncRNA downstream 86175 35934796 ~ 35935181 (-) False AMCG00019665
TU44768 lncRNA downstream 1370369 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 1371125 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 1442884 34506033 ~ 34578472 (-) True G35792
TU45001 lncRNA upstream 12362 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 125849 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 357295 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 495570 36537687 ~ 36537903 (-) True G36080
TU45088 lncRNA upstream 524812 36566929 ~ 36567264 (-) True G36082
AMCG00019663 mRNA downstream 6650 35999381 ~ 36014706 (-) True AMCG00019663
AMCG00019665 mRNA downstream 39820 35934800 ~ 35981536 (-) True AMCG00019665
AMCG00019664 mRNA downstream 95015 35912844 ~ 35926341 (-) True AMCG00019664
AMCG00019666 mRNA downstream 118579 35895854 ~ 35902777 (-) True AMCG00019666
AMCG00019661 mRNA downstream 258115 35742867 ~ 35763241 (-) True AMCG00019661
AMCG00019668 mRNA upstream 27467 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019673 mRNA upstream 154781 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019672 mRNA upstream 175187 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019674 mRNA upstream 603250 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019675 mRNA upstream 673820 36715937 ~ 36742382 (-) True AMCG00019675
TU44832 other downstream 965912 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 1499086 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3787958 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6336054 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6375393 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6501999 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6602207 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7256114 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7535192 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 8854382 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile