RNA id: AMCG00019668


Basic Information

Item Value
RNA id AMCG00019668
length 1818
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00019668
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36069584 ~ 36078155 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAACCCTGATGTCAAttatttttctgtctgtcttttcagTGGTCCACAGAATAGACAGTGTCACTGAGTTCTTTGATACCTACAGAGGGCGGATTAGATCTGTGGAGAATGACTTGAAGAAACTTGATGACCAGACAGGACAGAAATCAAAGAACTCTTCAAGTGAGATATTGGTGTTTAAGTCTAACATTCAAATGCTCCAACAGCAGCTCAGTGACATTGCAGAAAAGGCCACTCAAAACAGAGCGGCATTGGACAAGCTGCAAGTTGCTGGGCAGTCCATGGAAACAAGGCACAGCTCCCTACAAGGCCTCCTGGACAGCAATTCCAACATGATCAAGAATGTGAACCGCACTCTCCTTACTTATAGCAGCTACATCACCAGCCTACAGGAAGACACCACGCGCCTCCAGGCAGATCTGCAGGGTCAGGTAAGGGACCAGAGCCTCACGGTGGTGAACATCAACAGCCTGAACCTCACGCAGGCCCAGCAGAGAAACTTCATCACTGCCTTGCAGAAATCTGTGGACGACACCAGCCAGGCTATCCAGAAGATCAGGAACGATTTTCAAAGCCTGCAGCAAACCTCCCGGCAGACGAAGACGGACACAGAATGGCTGAAGGAGAAGGTGCAGAACCTACAGGCTCTGGCCACCAACAACTCAGCCTTGGCCAAATCCAACAACGAATCCCTTGAGGACATGGGAACCCAGCTGGCTGTCCTCGGCGGTCAGATTCAAAACACTTCAGCCATGGCAGAAGGCCATGACCAGAGCCTGCGGGAGCTGATGGACCAGCAGAGGGACCATGACAACTTGACGTCAGCTAAGTTTGATACCTTCGAGCTGCGCATGGACAACACGGAGCGGGACATCGACCGCATCACTGGCAACATCAGCTACACCACCCAGCTGCTCGGATCCATCAACACCAATCTCAATGATTTGCGGACCTGCACTGAGACCATTGGCCGACACTCGGACTACCTGCTCAACCTGAACAACTCGCTGGCGGACGTGCGCACAGACACGGTGGCCCTCCGAACGCAGCAGGAAGACCTCGGATCCAGGCTGGATAAAGAGGTCACCAGTCTATCCATCATCATGGAGGAAATGAAACTAGTGGACAACAAGCACTCTCAGCTCATCACGAACTTCACCATCCTTCAAGGCCCTCCAGGTCCTAGGGGGCCTCGGGGAGACAAGGGATCACAAGGCCCAATGGGGCAGACTGGGCagaaaggagagaaaggggaCAAGGGGGAACCAGGCTTGCCGGGCCCGCGGGGAGAGAAGGGTTCTGCCGGACCTCCAGAGATGGGCAACCAGGTCTCCAAGGGCCACAAGGTCCACCAGGGGTACGAGGGGCAGTTGGACCTCCTGGACCACCAGGACCTCGGGGACCACAGGGCCCCGTTGGATCACCTGGACCCCCTGGACTCCCAGGCCTCCCTGCCAGACCAGCAGAGCTTGGTGGCCCAGTGTCACTTCAAGAGGGGACCGCCACTCCCACAGCTAAAAGCCAGGCAATGGATACGAAGGCAGGTTGCTGGCAAGGGCTTCTTTTGGTTaggactgacagacagagaagaagaaaacaccTGGAAGTGGGTGGATGGAACAATGCCATCCTTTACAAAGTGGAAAGCAGGCCAGCCCGATAACTGGAGCCATGGCCATGAGCAAGGGGAGGACTGCGCTGGCATGATCCACGAGGGCTACTGGAATGACTTCTTCTGTGAAGAGATCAACAGTTTCATCTGTGAGGCAGACAAGGAGAAAGGTAAGCCAAACACCCCCTTTACAGGGAGATGA

Function

GO: NA

KEGG:

id description
K10062 COLEC12; collectin sub-family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45001 lncRNA downstream 8287 36054479 ~ 36061297 (-) True G36016
TU44973 lncRNA downstream 134403 35934796 ~ 35935181 (-) False AMCG00019665
TU44768 lncRNA downstream 1418597 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 1419353 34645135 ~ 34650231 (-) True G35803
TU44747 lncRNA downstream 1491112 34506033 ~ 34578472 (-) True G35792
TU45034 lncRNA upstream 89811 36167966 ~ 36168171 (-) True G36038
TU45080 lncRNA upstream 321257 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 459532 36537687 ~ 36537903 (-) True G36080
TU45088 lncRNA upstream 488774 36566929 ~ 36567264 (-) True G36082
TU45099 lncRNA upstream 680875 36759030 ~ 36759351 (-) True G36093
AMCG00019667 mRNA downstream 27467 36021356 ~ 36042117 (-) True AMCG00019667
AMCG00019663 mRNA downstream 54878 35999381 ~ 36014706 (-) True AMCG00019663
AMCG00019665 mRNA downstream 88048 35934800 ~ 35981536 (-) True AMCG00019665
AMCG00019664 mRNA downstream 143243 35912844 ~ 35926341 (-) True AMCG00019664
AMCG00019666 mRNA downstream 166807 35895854 ~ 35902777 (-) True AMCG00019666
AMCG00019673 mRNA upstream 118743 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019672 mRNA upstream 139149 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019674 mRNA upstream 567212 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019675 mRNA upstream 637782 36715937 ~ 36742382 (-) True AMCG00019675
AMCG00019678 mRNA upstream 994263 37072418 ~ 37089963 (-) True AMCG00019678
TU44832 other downstream 1014140 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 1547314 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3836186 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6384282 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6423621 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6465961 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6566169 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7220076 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7499154 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 8818344 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile