RNA id: AMCG00019673


Basic Information

Item Value
RNA id AMCG00019673
length 2860
RNA type mRNA
GC content 0.48
exon number 22
gene id AMCG00019673
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36196898 ~ 36216373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGAATTAATATTCAGCAGTACTTCATTACCAAGAAGCTAGTGGTTTCTTTTTTGGTGACAAACAACAATATTTAGGAGCTCTAGCAATGTTAAAGcgcaaaataataaatctgtcaGTCAGCGATGTGAGATTTCCTACGTCTCTTGAGCAGCATGGGTCGGATGCAATGCACCCGGACCCAGACTACTCCGTGGCTTACGCTGTGATCGAGACCCAGGGCGGCTTAAAGGGGTATGGACTCACTTTTACCTTAGGGAAGGGCACAGAAATCGTTGTGTGTGCGGTGAAGGCTCTGTCGGCTTTTGTGATCGGAAAGCATCTGGAAGACATTGTGGATGACTTCCGTGGCTTCTACAGACTGCTCACGAGCGATGGGCAGATGAGATGGATTGGACCCGAGAAAGGAGTGATCCAGTTGGCCACGGCAGCAGTTCTCAATGCAGTGTGGGATCTCTGGGCCAGAGCAGAAGGAAAGCCACTTTGGAAGTTGCTAGTAGATATGGATCCTGAAAAGCTCATATCATGTATAGAGTTCAGATACATCACTGATGCCCTCACAGAGAAGGAGGCTTTGGACATTCTCCTCAGAGCTCAAGATGGAAAGCGCAAGAGAGaagaaCAAATGCTACAAGAGGGATACCCTGCATACACCACCTCTTGTGCCTGGATTGGATACTCAGATGAGCAGTTAAAAGAGctgtgtATGAAGGCCCTGAATGATGGGTGGACAAGGTTTAAGGTGAAAGTGGGGGCAGATTTACAGGATGATATTCGCAGGTGCAGTCTCATAAGGAAGATGATAGGACCCGACAATGTTCTGATGATAGATGCCAATCAGCGATGGGATGTTGCAGAAGCCATTGAGTGGGTTTCCAGGTTGGCTGAGTTTAAGCCTCTCTGGATAGAGGAACCCACTTCCCCTGATGACATCCTGGGACACGCTGCCATTGCCAAAGCTTTGGCTCCCCTCGGAATTGGCGTGGCAACGGGAGAACAATGCCACAACAGAGTGATGTTCAAGCAGCTGCTCCAGGCCTCCGCGCTGCAGTTCGTTCAGATCGACAGCTGCAGACTGGGCAGCGTCAACGAAAATCTGTCTGTGCTTCTCTTGGCCCACAAATTTGGAGTCCCTGTGTGTCCTCATGCTGGTGGCGTGGGACTCTGTGAGCTGGTACAGCATTTAATCCTGTTTGACTACATCTCTGTGTCAGGCAGTCTGGAGAACAGGATGTGCGAGTATGTTGACCACCTCCACGAACATTTTACAAACCCAGTGATCATTACCAATGCATCCTATGTGCCACCAAAGGATCCCGGATACTCCTCGGAAATGAAGGATGACTCCGTGAAAAGTCATGGATACCCCGATGGAGAGGTCTGGCAGAAGCTCCTTGCCAGCTAAAGAGACAGAAACTGGAGAACTAAAGCATCAAATCATGACAAcctgaattaaacattttttatgataATAAAAATTAGTATTACTTTTTAGAATATAGAAACAACTAATAACCTTGCATAAATTAGATCAGCAGAGCACAAAGCAACTAAAATTCACAATCTTTATTGGTTAAAGCCAATAAAACATAGTAAAaacttaattacaaatatttacaatcaTGCAAGATAGAAACAAACATGGTTTCTATTcattataaaaaggaaatcttgaagtatgaattaaaaaccttgaaataaaaacacacatttcccaAACTGGACTCATTCTATAAAACTGCTTTTGTCAAACtgccatttgcattttaataacaggATGGGGATTGTAATCACAAATTTCAAAATCATCGGCTCGGAAGTCGTCAATACTGTCCACTTGGCGCAGGATTTTCAATTTAGGGAAGGGCCTGGGCTCTCTCTGGAGCTGCAGTTTCAGAGGCTCTATGTGATTAATGTAAACGTGAGCATCTCCAAGAGTGTGGACAAAATCGCCCGTCTACAATCCAGTAATGTGAGCAATCATGTAGGTGAGGAGTGCGTAGCTGGCAATGTTGAACGGCACACCCAGCCCCATGTCTCCCGACCGCTGGTACAGCTGGCACGACAGTTCGCCATCAGACACGTAAAACTGGCACAGGGCATGGCAAGGAGGAAGAGCCATTTGGGAAATACCTTTGGGATTCCAAGCGCACATGATGATGCGTCTGTCTTCAGGGTTGGCCTTGATGGTGTCTATGACTTTCTGCAACTGATCCATGCCTTTCCCAGTGTAATCTgTGTGCATGTCTTTGTATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAGACTGGGCCCAAGTCTCCTTCTTCTCTGGAAGTGAAACCATTCTTGTCTAAAAAGTCCCGGGATCCATTTGCATCCCAGATTTTGACTCCCTTCTTGGATAGCTCTTTGGAATTTGTGGAGccctaAATAAACCATAACAGCTCTTCCAGGATTCCTTTCCAGAACACTTTCTTTGTAGTCAACAGTGCAATGTCTTACCGCGGAGACTGTATCTCGCCTGCGACCCAAACACAGACACCACTCCCGTCCCCGTCCGGTCGCCCCTCCGGGCCCCGTGTTTCAGGACGTGCCGGATCTGGCTCAGATAGCCGCGCTCGTCGCAGAAGAGGCCGGGCTCGGGCTCCGGGGCTGCCGGCTGCGGGCCGCTGCTCTCCGCCTGCGTGGCTGCATCACTGAGGACTTCTGAAGTAGCGGGCATTTTCTTctagcagtttgtttttgtgcagtgGAGGCACCGACACAGTCTGTCTGTTTCGGTTTACCGCTTATTGGATATCTGTTCTGGGATTTCAAGCTAATATCTGAACGCAGGCGCCGCACACGACTGCTGCTGAGCGGGTTTGAAAGTCCC

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18334 fucD; L-fuconate dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45034 lncRNA downstream 28727 36167966 ~ 36168171 (-) True G36038
TU45001 lncRNA downstream 135601 36054479 ~ 36061297 (-) True G36016
TU44973 lncRNA downstream 261717 35934796 ~ 35935181 (-) False AMCG00019665
TU44768 lncRNA downstream 1545911 34650702 ~ 34650987 (-) True G35810
TU44761 lncRNA downstream 1546667 34645135 ~ 34650231 (-) True G35803
TU45080 lncRNA upstream 183039 36399412 ~ 36399659 (-) True G36074
TU45086 lncRNA upstream 321314 36537687 ~ 36537903 (-) True G36080
TU45088 lncRNA upstream 350556 36566929 ~ 36567264 (-) True G36082
TU45099 lncRNA upstream 542657 36759030 ~ 36759351 (-) True G36093
TU45101 lncRNA upstream 695253 36911626 ~ 36911979 (-) True G36095
AMCG00019668 mRNA downstream 118743 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019667 mRNA downstream 154781 36021356 ~ 36042117 (-) True AMCG00019667
AMCG00019663 mRNA downstream 182192 35999381 ~ 36014706 (-) True AMCG00019663
AMCG00019665 mRNA downstream 215362 35934800 ~ 35981536 (-) True AMCG00019665
AMCG00019664 mRNA downstream 270557 35912844 ~ 35926341 (-) True AMCG00019664
AMCG00019672 mRNA upstream 931 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019674 mRNA upstream 428994 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019675 mRNA upstream 499564 36715937 ~ 36742382 (-) True AMCG00019675
AMCG00019678 mRNA upstream 856045 37072418 ~ 37089963 (-) True AMCG00019678
AMCG00019679 mRNA upstream 981883 37198256 ~ 37220428 (-) True AMCG00019679
TU44832 other downstream 1141454 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 1674628 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 3963500 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6511596 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6550935 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6327743 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6427951 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 7081858 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7360936 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 8680126 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile