RNA id: AMCG00019678


Basic Information

Item Value
RNA id AMCG00019678
length 1869
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00019678
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37072418 ~ 37089963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAGATGTCAGCGCCCTGTGCAAATCGAAACTGCAAACTTGTATAGGCTACATCAATGATATATAATATTGCTCCATTTTTTTTAACGTGTTATACTTTTCATAATCACTTTGTTGTCAATGTCTGTCGTTTTCAAGAATACCAAAGGATGGCTTTTGGATCAGCGTTCTCATATAAACAAAAGTTTTCAGAGTTGCCTTTTAGTTAAAGACCCTGGCCTGAAACAGTACGTGCAATTTAGTTTGAAACGAAAATATTTTGACATCTTAAAACCCCATATTTTGGCGAAGACATTCACAAACCTGGATGCTCCCGGTACTGTCCATCAAGAAAGCAAAAGCAACGAGGAGAGTTCACAAACGAGAAGCGAGGATACATTGCATTTGAGGGTCAGATGTAAGAAACGCAAGCGAAAACATAAGGAGCTTAACCAAGGAGAGATTGATTCAGAATCTTACCATGAAAAGGTTAGGAAAATCATATTAGAGGGCACCAAATCTTTAGTTGAAGAAGGTTTTACTTGTGATTACCTCTACGGAGCAAGAGTAAATGAATGGCATGAAAGTCTTGATTTGACAACGGTTGATAGCAGACTTGCAGATCTTTGTGAAATGGCAAAGAAGCTTCCAATTGGGAATGGCATTGAGCAGGGATCAGTGCAGACAATCACTGAGGATCAGACTTCCACAGAACTGGACTTATTTGAGTGtattacacaaaacaacatGGACTGTGCAAGACTGGTAACATTGATGGGGGAGAAATATCTCCTACCCCCGCACTGCAGCTTCTTACTTTCTGATATATCGAGAATGCAGCCCCTTGTGAACTCTAATGAAAGATATGACGTAATTGTTCTTGATCCTCCTTGGGAAAACAAGTCTGTAAAACGGAGCAAGAGGTATAGTTCCCTGCCGCCCTCTCAGCTGAAGAGGATACCTGTCCCTGAGCTAGCAGCCCAAGGTTGTCTTTTGCTCACATGGGTAACAAACAGACAGAAGCACTTACGATTTGTGAAGGAAGAATTGTACCCTCACTGGTCTGTGGAAGTGCTTGCAGAGTGGCTGTGGGTGAAgattaCAAACTCTGGGGAATATGTGTTTCCAATTGATTCTCCACATAAAAAACCCTATGAAATCCTAGTCCTGGGGCGGTATTGCAAAACTAAGGATGCATCATCGAGCTCTCCAGTAAAGGATGAAAACCCTCTCCCAGATCACAAGATAATTGTGAGTGTTCCCTCTACTCTTCATTCACAGAAACCTTCACTAGCAGACGTGCTGGAAGAATATGTTGATCCTGAAGCAAAGTGCCTTGAGTTGTTTGCACGCAACCTTCAGCCTGGATGGACCAGCTGGGGAAATGAAGTCATTAAGTTCCAGCACCTGAGTTATTTTAATATGGAGGAGACAGGCCCAGACTCCCTAACCTAGACTAAGCATCACACTTCCATTTGAAGCCTTTCATGTGTACCATTTAACCTGGGTTTTACAGTCTTACACCAGCCTCCTAGATggttattttaatatcaaaggTCTAcggattttattttgtgtgtgtgcatacatatatacatatacatgacAGTTAAAATTACAGAACCTTATAGATCACATGATTTATGACTCAGATTAAGAAAGCGTTATATCTGTATGTAGACAGAGACTGCAACATGTTGGGAAAGATGATTAAGCTATATTTCTGTGTATGTTCAGATGCAATACTACCTTTCATGATTAACACCAGTTTGAGGACAAAATTATGACCATTTACATGAAATAAACACcccagttttaattttaaatgtgtgtgatattatttgtaaatgcattgcTATAAGATCAAATGAGTTAGAGGTGTGCATCC

Function

GO: NA

KEGG:

id description
K24174 METTL4; N(6)-adenine-specific DNA methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45103 lncRNA downstream 150612 36921583 ~ 36921806 (-) True G36097
TU45101 lncRNA downstream 160439 36911626 ~ 36911979 (-) True G36095
TU45099 lncRNA downstream 313067 36759030 ~ 36759351 (-) True G36093
TU45088 lncRNA downstream 505154 36566929 ~ 36567264 (-) True G36082
TU45086 lncRNA downstream 534515 36537687 ~ 36537903 (-) True G36080
TU45173 lncRNA upstream 77470 37167433 ~ 37186156 (-) True G36160
TU45188 lncRNA upstream 235835 37325798 ~ 37326994 (-) True G36172
TU45206 lncRNA upstream 279143 37369106 ~ 37372128 (-) True G36184
TU45330 lncRNA upstream 648312 37738275 ~ 37740601 (-) True G36267
TU45347 lncRNA upstream 883490 37973453 ~ 37973683 (-) True G36284
AMCG00019675 mRNA downstream 330036 36715937 ~ 36742382 (-) True AMCG00019675
AMCG00019674 mRNA downstream 356682 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019672 mRNA downstream 832037 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019673 mRNA downstream 856045 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019668 mRNA downstream 994263 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019679 mRNA upstream 108293 37198256 ~ 37220428 (-) True AMCG00019679
AMCG00019682 mRNA upstream 148926 37238889 ~ 37309104 (-) True AMCG00019682
AMCG00019685 mRNA upstream 288759 37378722 ~ 37384501 (-) True AMCG00019685
AMCG00019687 mRNA upstream 301343 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019683 mRNA upstream 331453 37421416 ~ 37425118 (-) True AMCG00019683
TU44832 other downstream 2016974 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 2550148 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 4839020 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 7387116 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 7426455 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 5454153 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 5554361 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 6208268 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 6487346 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7806536 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile