RNA id: AMCG00019681


Basic Information

Item Value
RNA id AMCG00019681
length 3133
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00019681
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37372379 ~ 37378679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATCGCACGCCTGCGCCCTGGTCCGCCCTTCTCCGTCAGCCGTCCTGCCTGAACCCGGAAGTAAATACTGGTCTTGTAACCACGTTTTGCTTCCTCTGGCGCCGGTCTTGCAGCCTCCAGAAAAGGTTCAGAAGTTGTCAATTAATCTTCCACAATGCTATGGCTTTCAAGTTTCTGCAAAGATTTCGGAGTTGGAATTTAACAGTGAAACCATTATGCTTCCCGACCAGTGTGGCATATCTCTCACGGCACACTGGCACCCATGGGAAGgtgctgtgcccagtgtgccTCTGGACGAGATCCAGTCGCTGCATGTTAAGACAGGGATGCCAGAGATATCGTTATGACTGTCAAAGCATGAGCCTGTCAACCACCTGGGATCCTCTGTATCTCACAGGAGGTTCTGTCTGTCTCCACGCAGATGCTTCTGACAGGTTTAGGCTCACTAACCAGCAGTCCGCAACACTGGACGATGAGGGCTTTGTAGAACAGCTCGGACACTGCTCTTCCTCCAGGCATGTTTTCAAACTCCTCCTTTCCTTACAAACCATGTCTGACATGATGGCTGCCTCAGCTCTACAGAGGATTGCCGAGCTGGAGCGTGATGCAAATGCGTTGAAGGACCCAGCTGTTCTGGACCATGATGTTTTGAAAGCCCTCTGTTTCCAGTTTGAACAGGACTCTAAGAGGTTAACGGATACAGGCCTGGTGCGTGCCCTTCATGCCTGTACGCAGCTGTTGGTCGACCCCTGGAGCACACTTATGATACGCCTGGTTTCTGAGAGCCAGGAGCGTCTGGATAGGGGGGCCATGGCAATCAAAGACCTCTGTGTTTTGGCACAAGCACTTTTAGCCCTGGAGGGGCCCGACTGTGCAATGTTGAAGCCAGTCATAGAGCAGATACAGGGACACAAGATGACGGAGTGGAGCTTGGAGAATTTGACACAGGTATACAGCATGCTGCAAGCAGGAGTTGGGGTAGGAGGCCGCTACCagaatctcctgaactccatgAACACCTATACCATCTCTGTAGCCTCCAGTCTGAGTCCTTCCTCTATCAGCCAGATACTGAACTCATTGGTCGTTCTGAACCAAACCCAGGCCATTCCCTTGGTCATAATGTTGTGCAAGCACACAGTGAAGCATGTGTCCCGGTTTTCAGATGGAGAGTTGGTGCACGTGCTGGAGGCTTTAATGCACTTTGGCCACAGCGACCAGTACTTTGTGGATGCTTTGGAAAAGCATGTCCCCAAGAACACCTTCACCATGGAAGCAGAGGCTGTGACCAAAGTCCTGCAGTACTGCGGCCGCAGGTTGATTCTCTCCAAGGCCATCTTTGATGCCGTGGCGGAGAGCTTCGTATACAGAGCGGACTCTTACAGCACCAGCCAGATCGCCAGGCAGATCATGCCCTTCGGGAAGCTGGGGTACCTGCCACCAAATGCGGGAGAGCTGTTCTGCAAGGTGGAGGGGATCCTCCAGACCCGCTTCTCTCAGTTTCAGCCCCGCACTCTGCTTAACCTGCTGCACTGCTGCACTCTCATTGAAAGGTTCCCTGTGAATTTTGTGGCTAAAGTTTTTAATCCCTATTTCCTTCAGCAGTTAGAAGcatGGGGTAATGGCTTAGACAAGATCCTTTTGTCACAGCTGACACAGCTCTTTATGACTGTGAAACTTGAGTGTCCATTTTACAAGggtCCCAACCTCCTTCCCAAATACCGTGTGAAATCTTTCCTGACCCCTGGCCGATCCCTGGAAACTCCTGTGGACATTCTTCTTTACAACCGGGTCAAGGCGGGCCTGATCGACCTGCTTGGAGCTCGAGCTTACTTTGCATCCCGTGTGTTGACCCCGTACTGCTATACTTTAGATGTGGAGATCAAGCTAGATGAAGAAGGATATGTGTTGCCAGCCAGCCATCATGAGATCATCTACAGGAGGATAGCACTCTGCATCGATGGCCATAAGAGATTCTGTGCCAATACGCATCACCTCTTGGGAAAAGAAGTCATAAAGCAGCGGCATCTGAAACTGCTGGGTTACGATGTTGTGCAGataCCATTCTATGACTTTGATAAGCTGTGGGATCGTGCAGAAATAGTGGAATACCTTCATAAGAAGATCTTCCCCCACAGCTACCGACTCAGCTGGTGACACTACGGGAATTAATCACTGGTTCGGAGTGGAAAGGAACGGGTTCTAGAAAAGTAGCTTTGCCACTGCCACGATATATCCAATAATATATCCAGTGTCATTGGGTATAGATTCAGATGTTCAGAACTTCACTTTATTTACACCAAAACTATTAACTGACTTATGAACCCAGATGAATGAGCCTGTGATACACATTGTCTCACTGATtcaagtaatacaaaaaaatgtccattgaaagaaattaaaatatttgtctgGTTTCTGAACAGTGTCAACCCCACATGTCACTGTGTCACATGTGCTTCCTCTCTATCTATTACACAGTTTTCTATAAACACAATTAGCTTTGGGTTTGAACAAATATGGTCCTGTTGAGTTCAATACTTatcttttccagttatttcttACATCTTGAGAGCAGCAGGATCTTAAATAAGTCAAGTTCAAATTTTGTTTGTCTATGGAATCTAAAACACTGAGGTCCACCATAccataaattaagttaaatatgaCTAGAAAGTCTGAACTGCAAAATCCCACAATCTCTTAGGCTACATATTTACCTGATGCTTCATTTGGATGCTAATTACACATCTTCAAATATTATTCTACCTAGTGAAGCAGATTTGTTGTCTGGGTTCTCTGTACTGCCTGGACAGTATGAGATATATCTcagcttaaatacattttcattatttatgttcTGCACAGCTGATTTTAGCACATACAGTTATTTGGGAAACAGCCTGTTCTGTTAGCAATGCCTCATTTTGATCTAGGGTAATATGCCATATCCCAAACCATCCACCTGACATGGAAACATTTCAGGaatccttttaattaaaataccacaCAAGGAGATCAGCGCAAATACAGGAAAGAAGAGTGTTTGGAGTACAGTTTctgatgaaaacaatacaacatgATTACTTCATTTAGCTGTTCCAATCTCTGAAGATCTGAAgttttaag

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45141 lncRNA upstream 131885 37238889 ~ 37240494 (+) True G36130
TU45128 lncRNA upstream 167417 37201924 ~ 37204962 (+) False AMCG00019676
TU45113 lncRNA upstream 311735 37060418 ~ 37060644 (+) True G36106
TU45105 lncRNA upstream 425881 36946101 ~ 36946498 (+) True G36098
TU45100 lncRNA upstream 460400 36911541 ~ 36911979 (+) True G36094
TU45218 lncRNA downstream 9649 37388328 ~ 37389962 (+) True G36189
TU45442 lncRNA downstream 1250529 38629208 ~ 38632178 (+) False AMCG00019708
TU45485 lncRNA downstream 1477160 38855839 ~ 38857856 (+) True G36370
TU45583 lncRNA downstream 1703431 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 1879352 39258031 ~ 39258546 (+) True G36464
AMCG00019680 mRNA upstream 1123 37365974 ~ 37371256 (+) True AMCG00019680
AMCG00019676 mRNA upstream 158860 37178359 ~ 37213519 (+) True AMCG00019676
AMCG00019677 mRNA upstream 203092 37091023 ~ 37169287 (+) True AMCG00019677
AMCG00019671 mRNA upstream 1072866 36292352 ~ 36299513 (+) False AMCG00019671
AMCG00019670 mRNA upstream 1171188 36197051 ~ 36201191 (+) True AMCG00019670
AMCG00019689 mRNA downstream 20921 37399600 ~ 37406431 (+) True AMCG00019689
AMCG00019691 mRNA downstream 31089 37409768 ~ 37419547 (+) True AMCG00019691
AMCG00019693 mRNA downstream 225834 37604513 ~ 37606380 (+) True AMCG00019693
AMCG00019695 mRNA downstream 227781 37606460 ~ 37607720 (+) True AMCG00019695
AMCG00019694 mRNA downstream 229396 37608075 ~ 37619035 (+) True AMCG00019694
TU45071 other upstream 1072832 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 1308534 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 1308534 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 2521056 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 4979403 32330637 ~ 32392976 (+) False AMCG00019609
TU45249 other downstream 135308 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 5177861 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 5581977 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 5883215 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 5951613 43330292 ~ 43333313 (+) True G36954

Expression Profile