RNA id: AMCG00019683


Basic Information

Item Value
RNA id AMCG00019683
length 1629
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00019683
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37421416 ~ 37425118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTGTGCTGGGTGGATAAGGCGGAGGCTCCAGCCAGTGCAAGGCCCACTGTGCTGCAGACTCTGGAGGTCACTCTGCAGGAGTGGGGCTTCACACAAGACGACCTCACTGCCATTCAGCAGATCATTAAACAGTGGGCTGAGGCAGctatgcaggctgtcatggacTACCAGTCACAGCTCTCAGACCAGGACAAGGGTGGAGCTGGAGCTCAGACTGATCTGATAGGGGTGGAGTTTGCACTGATTCAGCAGGATGGAAAACTGCGCCCTCTTCTCCTGAGGTTGACTGCCCACCACAGAGGGGTTTACAGCACAGCCTTCAGTCTCCTGATGCTCCCAAGGCTGGCCCATACTGTGGAACCCCTCCTACAGACCATGTGCCAAAGAGCCCACTCCTTCTTCATAGCCAGGAAGACAATACTTGTAATCGGAGGAGGCGAGTCCAAGAAGATGTCCGTGTGGCACACAGCCAAGAAGCAAAACATCAGGGTAAATTgtaaTCTTGATGAAGCTCATGCCCGAAATATAGCCAGAATTATACGTGAGTCAAATCTGAATATCAACGGCTGCTTGACATTTGTTTGTAACTGTTCTGTTCTGACATCTCTTGTGTGCCAAGAGCTACGTCTCCCTAGTAATGGTGTTGAAGTGATCAACATTGCCAAAAAGAAAAGTCACACCCAGCAGCACTTGGGAAGAGTTGCTCACAGTCTGCAGCACTTCCCTGATGTCTCAGTCTACACAGTGCCCTCCTTGCAAGTCATCAGTCCAGCAGAGCTTCAAGAGGTGATAGAGAAAGTGGATTTTCCAGCAGTGATGAAACTTGAATATGGTGAAGGCGGATTAGGTGTCAAAATAGTAGAGAATCTCCAGCAATGTGAGGAATTCTATGACGGCATACAACATGAAGAACTTATCACTAGGGGAATTAGTCCAGAAGTAATGCTAATGGAGTATGTGGGTGGGGAGAAGCATGTTGTTGACCTGATCATCTTCAGTGGGAAGTTACTGGCTGCATTTGTCTCTGACTATGGGCCCTCTGGATCCTCTTACTTTCTGAACTTATCACACATAATGCCCTCTAAGCTCTGTCCTGAGAAGGTGAACCAGCTAGTCACTGCAGCTTACCAGAGCTGTATCTACTGTGGCCTGAAGAACGGTGTCTTCAATGTTGACTTAAAAATGACTGAAACAGGCCCAAAACTCTTAGAGATCAACCCAAGAACAGGTGGGATCTACTTGCCTGCCTGGATTAAGACTGTATATGGGTTTGACCTAATTCTGGTTAGCTTTCTAATTGCCTGTGATATCCGACCGCATGCTTGGACCCCAGAGCCCAGGGGCCATATTGCTGGGCTATCAACCCCCCTGACTCAGTATCTGCAGGCTTTAGAAAACCCTTCATTCACTGCAACTTTAAAACACTTGGAGATAAATGGAATTATCCATAGTTCTATGATAAGAGATGATTCCAGCAAACCTGACTTTGAAGTTGTCTCCCTTAACATTTCCAGCTTTAGCCCCAGCAAGGAGGAAGTCTTCAAGAGACTCCTTATTGTCTCCAAAATCCTTGGACTGGATTCTAATGAGTATCCATTCAAATATTTCCTAGACCCCCTAATGTAA

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45206 lncRNA downstream 49288 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 94422 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 235260 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 499610 36921583 ~ 36921806 (-) True G36097
TU45101 lncRNA downstream 509437 36911626 ~ 36911979 (-) True G36095
TU45330 lncRNA upstream 313157 37738275 ~ 37740601 (-) True G36267
TU45347 lncRNA upstream 548335 37973453 ~ 37973683 (-) True G36284
TU45373 lncRNA upstream 562125 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 562125 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 626095 38051213 ~ 38109937 (-) False AMCG00019698
AMCG00019687 mRNA downstream 22789 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019685 mRNA downstream 36915 37378722 ~ 37384501 (-) True AMCG00019685
AMCG00019682 mRNA downstream 112312 37238889 ~ 37309104 (-) True AMCG00019682
AMCG00019679 mRNA downstream 200988 37198256 ~ 37220428 (-) True AMCG00019679
AMCG00019678 mRNA downstream 331453 37072418 ~ 37089963 (-) True AMCG00019678
AMCG00019686 mRNA upstream 32975 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019688 mRNA upstream 66118 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019684 mRNA upstream 140152 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019692 mRNA upstream 316391 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019698 mRNA upstream 464326 37889444 ~ 38110224 (-) False AMCG00019698
TU44832 other downstream 2365972 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 2899146 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5188018 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 7736114 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 7775453 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 5118998 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 5219206 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5873113 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 6152191 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7471381 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile