RNA id: AMCG00019684


Basic Information

Item Value
RNA id AMCG00019684
length 4709
RNA type mRNA
GC content 0.46
exon number 24
gene id AMCG00019684
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37565270 ~ 37590061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAACTCCATGGACTTGAAGTAGATGTTTCTCCTGTTGAAATAATCCGCAGGTTTTGGCCGGTTGTGAGCGCAGAGAGCCGGGGTTCACGCCACATCGACGACAGACCAGCTCACCTCCTGACTCTGAATGGCTGAAGCCCTAACTACAGGAGAACTGGAGCTGAATCCAGAGACAGCCGAATTTGTCCCAGGAGAAAGACGCAACCAGAGTCATTCTAGGAGAGGACGTCCCAGGCCAGAGTACAACAGGAACAGGAGTGGTCACTACACAGCCCCACGATCGCAGCACTATAACAGGCCCTATCATAATGAGGAGACTTTGCATGAGAGAGATCATCGTGGTCCCCAAAAGAACTACCACCCATCTCATAACCAGGAGGATGGCAGAGGAGGAAGCGGTAGAGGGTCAGGATGCCACAGCTTCCAGAGCCAGAGATGGCAGAGGCCCAGAAGTGCAAGAAGTTTTCCTGTAGACAACCCCACTCCACCTGGGAGGACCTGGACAGAGTCTCACCCTGAAAAACCTGATGCAGATGGGCCAAGCTGGAGGATGGAGGACAAGAGGGAAAATGAATTCAACAATGATCTAACCAGAGAAGAGACGAGAGATACACGGGCTAAAAAGACAAGGAAGTTCAGCAATGATTTGAGAAGAGGGGCAAGCGAGAGGGGGAGGCCGGCGTTTCACCGGGAAAACAGGGAAAATTGGACAGAGGGAGAAGGGGCTGCTTCTCAGGAGGCAGGTTCTGCAGAACGTGGTAAAGGAAGTGAAGGGAGGGCTCAGAGAGCAGTGGACAGGTATTCCCACTACAGCGCAAAGAAAAAAGGCCGGAGGCACTGGCAGGAGAGTGAAGAGGAAGCACTTCCGAGACGGGAAGTGAACAGAAGTGTAGGCCCAAAGTCATACGGTACTGCCTTCAGCAGAGAGGATGAGATGAACAGTTCCAGCCCTTCAGAGGAGCATAACTGGAAGAGTGAAAGGGGACAAGGAAGACGGATGCCACTTCAAGATCACGGACAGAAGAAGCAACACAACTCTGCCCGGAAACCTGTTTATAAAAAACAGGTGGATGTCCCCAAGAgcaaagaaacacagacagGATGCCTGATTGAGCAGCTAACGGAAGAGAAGTACGAATGCATGGTGTGCTGTGAGGTGATCAGGGTgatggctcctgtctggagctGCCTCAGCTGCTACCACGTCTTCCATCTGAACTGCATTAAAAAGTGGGCCAGATCCCCAGCGTCCCAAGCAGAGGatgGGAATGACGGTTGGAGGTGTCCTGCCTGCCAAAATGTAGCTGCTCGTGTCCCAAACTCCTACACCTGCTTTTGTGGGAAGGTAAACAATCCTGAATGGCACCGAAACGAGATTCCACACAGCTGTGGAGAGCTGTGTGGTAAAAAGAGAGCCGGTTTGGACTGCAACCATCCTTGTAATATTTTGTGCCATCCAGGACCCTGTCCACTGTGCCCTGCTTTTGTAACCAAATCTTGTGTCTGTGGAAAAAACAGTCAACCAGTGCGGTGTGGGCAGTCCACTCCAATCCACTGTCCTGAGGTGTGTGGGATCAAGTTGAACTGCGGAGAGCATTCCTGTGCTCTGGTCTGCCACAGTGGGAAGTGTCAACCATGCCAGATGCAAGTTAAGCAAGtttgctATTGTGGAGATGTCTCCCGGGAGGTGCTGTGTGGAACAGATAAGGATAACTTTGATGGATTTGGACAGTTCTCCTGTAAGAAACAATGTGGAAACTGTCCCTGTGGGCAGACTGCCCTCTCGAAGCTGATGGAGTTGGGCTATGCCGAGCGCAGGAGCTGCACAGACCCCGTCCCCTCATGCGGGAAGACCTGTGGCAAGCCCCTGCCATGTGGCTCTGCTGACTCCATTCACTTCTGTGAAAACCTGTGCCATGAAAACAGCTGTGGACCCTGCTCTCTTACTTCCACCATCAGATGCAGATGTGGCTTTAAGACTAAAgatGTTCCTTGTGCTAGCATCCAAAGTGAAGatGGACTTCTATTTACTTGTGAGAAGAGGTGCAACAAAAAGCGTTCTTGTGGTCGACACAAGTGTAATGAACTATGCTGTGTGGACAAAGAGCACAAGTGCTCCATGATCTGTGGGTACAAACTGAACTGTGGACAGCATCGCTGCCAAGAGCTTTGTCACCGTGGAAACTGCCAGCCATGCTGGCAAACAAGCTTTGATGAACTAACATGCTACTGTGGAGAAACTGTGATGTACCCACCAATTGCCTGTGGTACCAAACCACCTGAATGTAAAAACCTTTGCACTAGAAGGCATGAGTGTGATCATCCAGTATTCCATAACTGTCAAAGTGAGGAGAAGTGCCCTCCTTGTACCTACCTCACCCAGAAATGGTGCATGGGAAACCATGAGCAAAGGAGCAATATTCCTTGTCACCTGACAGATATCTCCTGTGGCCTGATGTGTAACAAAGAATTGTCATGTGGCATGCACAAATGTCGAAGGATCTGTCACCGAGGAGACTGTGTGACAGAGGTGAAGTGTAAACAGCCTTGTTCTGCAGTCAGACCGGAGTGTGGTCATCCGTGTGGAGCTCAGTGCCACCCGGGCTCAGCCTGTCCATGCACTCCTTGTTCAGCAAAGGTGGTGCTGCAGTGTGACTGTGGACGCAGAAAGGAAACCATGATCTGCGTTGACGCCTCAAACTCCTACCAGAGAATAACTGCAATAGCCATGGCTAGTCGGCTGTCTGACATGCAGTTGGGAGATTCGGTGGATATTGGCCAGCTGATCACGaagaaggaaattaaacaaGCTAGGTTGGAGTGTGATGAGGAGTGTGCAACACTAGAAAGAAACAGACGGTTTGCTGAGGCTCTGCGGATTGACCAGGGATCTGACCCCTTTAATATCCGCACTTCTGCATCCAAGTACAGCGACAGCTTGAAGGAAGATGCAAGgAAAGAATTCAAGTTTGTAAGTGAAGTggaagaggaaataaaaaaccTAGTTGAACTGGCATATAAGGGTAAGCAAACAAAAAGGAGTCACTGCTTCCCTCCAATGAACAGAGAGCACCGCAAGATCATCCATGAATTAGCTGAAGCCTATGGGATCGAGAGTGTCAGCTATGACAGTGAACCAAAGCGCAATGTAGTCATTACTGCAGTAAGAGGGAAATCTGCCTGTCCTAACACTACCCTAACAGCACTAATAGAACGGGAAACCACTGTCAGACCTCCCCCCCCGATTCCTCACATTAAACAGTACAGTCATAAGGCTGGCAGTGAGAGCAGTTGGCACAAGGTTGTGAAGGAGGAGCCTGTGATCGACTACTTCGATGTCCAGGATTGAACAGCGCTTCGTTGATGGATGATTAAAGAAAACTATGGAATGTTCCACTCTCAATAAACTGATGTGTATCTCTCCCCTAAAACACACCCAACATACCATCAATAAGAGAGATGTAATCTTGGTTTTGGAAAGCTGAAAACAAGGGTTTTGTTTCTTGCAGAGTACTGAATGCTTAATTAGACCAATGATTTCTTAATTGCCTCAAGTTAAAATGCTTTTCAGATCCAAACTTGTCGACAGTATGAAGCTttctataaaacctgcaggtTATAGATATCTAGGACCAGACTTGCAGACTCTTCCCATACATTTTAgcctcctttttattttataatataatgcaaatgcaaGGCTCACAGCTTACCAACCTAGGTGTCTTTACTGCTGAACTTTTTTGAAAACGAACAATTTTTGCCTCTGAAGACACGGATGGATATTATAGTTTAACATCCACCAAAGTCCTCTTGATGAATGCAGTGTGTACTCTTGAATAAGCAATAccaattttattataaaaactgtAACGTAATTGTAAAATCACCATCAACTTTAAAAGATCagaatgaaaacctgaaaactGCAGCACCTCTAgtttaaatatacaacaaagCACTTAAGCTCCAGTATTAAACAAATTCAACAATCTGGACAAATGCTGCTGTAAATCCCAGTTTTACTACATTTTCTGATCAGGACAGTGGATGCATCAAAGTGTTTCATGTTTTCAGCAGAAGTTGTTTCTAgttaggctttttttttttatgaggcTGAGGAAAACAGGTGAAGTAAATAAGAAGTGCATGGTTTGGGCTTTGTTGATGCTTATTACCTCCATTCAACAAAATTGGTTTTATCTCCTTGTTTAATTTCCCCCCCAACAACTACTGCTAATTTGCTTCTTGGTGTCTTTGTGTGCTTTCAGCAAGTGGCATTTCTTTGAAATCCTTCTGCTGAAGATGATCTGCTTTAGTCTGCGGTTTAGTAGCGGTTTGAATTTAGTCTGATCGTGTATTTGGGGAGCTTAGAagattctgttttctttctccaaaaTGGTTGCCCTTTTCATTGCTACTTCAAGTAAAGgttaattaacttaaattacaaatcaaatgaGCATTGGTTGATTTGTAGTGTGTAAAGGTATTGATTAATAGGATCTTAATAAATATTGGTTAACAAAGGGCACCACCTCTCCGAATATGATGAGTTTGCAGTTTATCCGTAAGCCAAGGCCTTCTGGAATAGAGAGACATGATGAGAACTAATTTCATatgctaataaacaaacaattgtccaataaattgtgttttggcCTTATTTCAGAGTATACAAACTACATGTTTTTCAATCCCATAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K12236 NFX1; transcriptional repressor NF-X1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45206 lncRNA downstream 193142 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 238276 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 379114 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 643464 36921583 ~ 36921806 (-) True G36097
TU45101 lncRNA downstream 653291 36911626 ~ 36911979 (-) True G36095
TU45330 lncRNA upstream 148214 37738275 ~ 37740601 (-) True G36267
TU45347 lncRNA upstream 383392 37973453 ~ 37973683 (-) True G36284
TU45373 lncRNA upstream 397182 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 397182 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 461152 38051213 ~ 38109937 (-) False AMCG00019698
AMCG00019688 mRNA downstream 72401 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019686 mRNA downstream 76128 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019683 mRNA downstream 140152 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019687 mRNA downstream 166643 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019685 mRNA downstream 180769 37378722 ~ 37384501 (-) True AMCG00019685
AMCG00019692 mRNA upstream 151448 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019698 mRNA upstream 299383 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019701 mRNA upstream 617821 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019703 mRNA upstream 672831 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019702 mRNA upstream 676293 38266354 ~ 38269323 (-) True AMCG00019702
TU44832 other downstream 2509826 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3043000 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5331872 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 7879968 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 7919307 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4954055 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 5054263 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5708170 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5987248 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7306438 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile